diff --git a/packages/cli/src/ui/hooks/atCommandProcessor.test.ts b/packages/cli/src/ui/hooks/atCommandProcessor.test.ts
index ca2ecf7bc1..8076d8a2be 100644
--- a/packages/cli/src/ui/hooks/atCommandProcessor.test.ts
+++ b/packages/cli/src/ui/hooks/atCommandProcessor.test.ts
@@ -17,6 +17,7 @@ import {
   handleAtCommand,
   escapeAtSymbols,
   unescapeLiteralAt,
+  checkPermissions,
 } from './atCommandProcessor.js';
 import {
   FileDiscoveryService,
@@ -1539,4 +1540,23 @@ describe('unescapeLiteralAt', () => {
     const input = 'user@example.com and @scope/pkg';
     expect(unescapeLiteralAt(escapeAtSymbols(input))).toBe(input);
   });
+
+  describe('checkPermissions', () => {
+    it('should handle ENAMETOOLONG gracefully in checkPermissions', async () => {
+      const longPath = 'a'.repeat(5000);
+      const query = `@${longPath}`;
+
+      const localMockConfig = {
+        getTargetDir: () => '.',
+        validatePathAccess: () => true,
+        getResourceRegistry: () => ({
+          findResourceByUri: () => undefined,
+        }),
+      } as unknown as Config;
+
+      // checkPermissions should not throw ENAMETOOLONG
+      const permissions = await checkPermissions(query, localMockConfig);
+      expect(permissions).toEqual([]);
+    });
+  });
 });
diff --git a/packages/cli/src/ui/hooks/atCommandProcessor.ts b/packages/cli/src/ui/hooks/atCommandProcessor.ts
index 512fe952ba..38cb541f1b 100644
--- a/packages/cli/src/ui/hooks/atCommandProcessor.ts
+++ b/packages/cli/src/ui/hooks/atCommandProcessor.ts
@@ -188,9 +188,15 @@ export async function checkPermissions(
     const pathName = part.content.substring(1);
     if (!pathName) continue;
 
-    const resolvedPathName = resolveToRealPath(
-      path.resolve(config.getTargetDir(), pathName),
-    );
+    let resolvedPathName: string;
+    try {
+      resolvedPathName = resolveToRealPath(
+        path.resolve(config.getTargetDir(), pathName),
+      );
+    } catch {
+      // If path resolution fails (e.g. ENAMETOOLONG), skip this path
+      continue;
+    }
 
     if (config.validatePathAccess(resolvedPathName, 'read')) {
       if (await fileExists(resolvedPathName)) {
diff --git a/packages/core/src/utils/paths.test.ts b/packages/core/src/utils/paths.test.ts
index bb2801a9ad..4d08c85548 100644
--- a/packages/core/src/utils/paths.test.ts
+++ b/packages/core/src/utils/paths.test.ts
@@ -602,6 +602,19 @@ describe('resolveToRealPath', () => {
       /Infinite recursion detected/,
     );
   });
+
+  it('should handle ENAMETOOLONG gracefully', () => {
+    const longPath = path.resolve('/' + 'a'.repeat(5000));
+
+    vi.spyOn(fs, 'realpathSync').mockImplementation(() => {
+      const err = new Error('ENAMETOOLONG') as NodeJS.ErrnoException;
+      err.code = 'ENAMETOOLONG';
+      throw err;
+    });
+
+    // Should return the path itself if realpathSync fails with ENAMETOOLONG
+    expect(resolveToRealPath(longPath)).toBe(longPath);
+  });
 });
 
 describe('makeRelative', () => {
diff --git a/packages/core/src/utils/paths.ts b/packages/core/src/utils/paths.ts
index 70afe289fa..064db93a74 100644
--- a/packages/core/src/utils/paths.ts
+++ b/packages/core/src/utils/paths.ts
@@ -440,7 +440,10 @@ function robustRealpath(p: string, visited = new Set<string>()): string {
       e &&
       typeof e === 'object' &&
       'code' in e &&
-      (e.code === 'ENOENT' || e.code === 'EISDIR')
+      (e.code === 'ENOENT' ||
+        e.code === 'EISDIR' ||
+        e.code === 'ENAMETOOLONG' ||
+        e.code === 'EINVAL')
     ) {
       try {
         const stat = fs.lstatSync(p);
@@ -457,7 +460,10 @@ function robustRealpath(p: string, visited = new Set<string>()): string {
             lstatError &&
             typeof lstatError === 'object' &&
             'code' in lstatError &&
-            (lstatError.code === 'ENOENT' || lstatError.code === 'EISDIR')
+            (lstatError.code === 'ENOENT' ||
+              lstatError.code === 'EISDIR' ||
+              lstatError.code === 'ENAMETOOLONG' ||
+              lstatError.code === 'EINVAL')
           )
         ) {
           throw lstatError;