diff --git a/packages/cli/src/ui/commands/planCommand.ts b/packages/cli/src/ui/commands/planCommand.ts
index f439b8535b..3de3a09519 100644
--- a/packages/cli/src/ui/commands/planCommand.ts
+++ b/packages/cli/src/ui/commands/planCommand.ts
@@ -27,7 +27,9 @@ export const planCommand: SlashCommand = {
 
         const plansDir = config.storage.getProjectTempPlansDir();
         try {
-          const securityCheck = await isDirectorySecure(plansDir);
+          const securityCheck = await isDirectorySecure(plansDir, {
+            owner: 'user',
+          });
           if (!securityCheck.secure) {
             context.ui.addItem(
               {
diff --git a/packages/cli/src/ui/contexts/UIStateContext.tsx b/packages/cli/src/ui/contexts/UIStateContext.tsx
index d912bbb66d..9e0202c864 100644
--- a/packages/cli/src/ui/contexts/UIStateContext.tsx
+++ b/packages/cli/src/ui/contexts/UIStateContext.tsx
@@ -25,7 +25,8 @@ import type {
   FallbackIntent,
   ValidationIntent,
   AgentDefinition,
- Todo } from '@google/gemini-cli-core';
+  Todo,
+} from '@google/gemini-cli-core';
 import type { DOMElement } from 'ink';
 import type { SessionStatsState } from '../contexts/SessionContext.js';
 import type { ExtensionUpdateState } from '../state/extensions.js';
diff --git a/packages/cli/src/ui/hooks/usePlanMonitoring.ts b/packages/cli/src/ui/hooks/usePlanMonitoring.ts
index 75e231f86a..d1dcbd4fa6 100644
--- a/packages/cli/src/ui/hooks/usePlanMonitoring.ts
+++ b/packages/cli/src/ui/hooks/usePlanMonitoring.ts
@@ -26,7 +26,9 @@ export function usePlanMonitoring(config: Config) {
 
     const updatePlan = async () => {
       try {
-        const securityCheck = await isDirectorySecure(plansDir);
+        const securityCheck = await isDirectorySecure(plansDir, {
+          owner: 'user',
+        });
         if (!securityCheck.secure) {
           debugLogger.warn(
             'Security check failed for plans directory',
diff --git a/packages/core/src/utils/planUtils.ts b/packages/core/src/utils/planUtils.ts
index ba4d251046..2c013e2d2b 100644
--- a/packages/core/src/utils/planUtils.ts
+++ b/packages/core/src/utils/planUtils.ts
@@ -44,7 +44,7 @@ export function parseMarkdownTodos(content: string): Todo[] {
         const description = taskMarkerMatch[2].split('\n')[0].trim(); // Take only the first line as description
 
         let status: TodoStatus = 'pending';
-        if (marker === 'x') {
+        if (marker?.toLowerCase() === 'x') {
           status = 'completed';
         } else if (marker === '/' || marker === '>') {
           status = 'in_progress';