fix(core): resolve nested plan directory duplication and relative path policies (#25138)

docs/cli/plan-mode.md

@@ -331,7 +331,6 @@ Storage whenever Gemini CLI exits Plan Mode to start the implementation.
 #!/usr/bin/env bash
 # Extract the plan filename from the tool input JSON
 plan_filename=$(jq -r '.tool_input.plan_filename // empty')
-plan_filename=$(basename -- "$plan_filename")
 
 # Construct the absolute path using the GEMINI_PLANS_DIR environment variable
 plan_path="$GEMINI_PLANS_DIR/$plan_filename"
@@ -360,7 +359,7 @@ To register this `AfterTool` hook, add it to your `settings.json`:
           {
             "name": "archive-plan",
             "type": "command",
-            "command": "./.gemini/hooks/archive-plan.sh"
+            "command": "~/.gemini/hooks/archive-plan.sh"
           }
         ]
       }