Fix -e <extension> for disabled extensions (#9994)

packages/cli/src/zed-integration/zedIntegration.ts

@@ -40,9 +40,10 @@ import * as path from 'node:path';
 import { z } from 'zod';
 
 import { randomUUID } from 'node:crypto';
-import type { Extension } from '../config/extension.js';
+import { ExtensionStorage, type Extension } from '../config/extension.js';
 import type { CliArgs } from '../config/config.js';
 import { loadCliConfig } from '../config/config.js';
+import { ExtensionEnablementManager } from '../config/extensions/extensionEnablement.js';
 
 /**
  * Resolves the model to use based on the current configuration.
@@ -204,6 +205,10 @@ class GeminiAgent {
     const config = await loadCliConfig(
       settings,
       this.extensions,
+      new ExtensionEnablementManager(
+        ExtensionStorage.getUserExtensionsDir(),
+        this.argv.extensions,
+      ),
       sessionId,
       this.argv,
       cwd,