Refac: Centralize storage file management (#4078)

Co-authored-by: Taylor Mullen <ntaylormullen@google.com>

packages/cli/src/ui/App.tsx

@@ -742,7 +742,7 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
     }
   }, [config, config.getGeminiMdFileCount]);
 
-  const logger = useLogger();
+  const logger = useLogger(config.storage);
 
   useEffect(() => {
     const fetchUserMessages = async () => {