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gemini-cli/docs/cli/system-prompt.md

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# System Prompt Override (GEMINI_SYSTEM_MD)
The core system instructions that guide Gemini CLI can be completely replaced
with your own Markdown file. This feature is controlled via the
`GEMINI_SYSTEM_MD` environment variable.
## Overview
The `GEMINI_SYSTEM_MD` variable instructs the CLI to use an external Markdown
file for its system prompt, completely overriding the built-in default. This is
a full replacement, not a merge. If you use a custom file, none of the original
core instructions will apply unless you include them yourself.
This feature is intended for advanced users who need to enforce strict,
project-specific behavior or create a customized persona.
> Tip: You can export the current default system prompt to a file first, review
> it, and then selectively modify or replace it (see
> [“Export the default prompt”](#export-the-default-prompt-recommended)).
## How to enable
You can set the environment variable temporarily in your shell, or persist it
via a `.gemini/.env` file. See
[Persisting Environment Variables](../get-started/authentication.md#persisting-environment-variables).
- Use the project default path (`.gemini/system.md`):
- `GEMINI_SYSTEM_MD=true` or `GEMINI_SYSTEM_MD=1`
- The CLI reads `./.gemini/system.md` (relative to your current project
directory).
- Use a custom file path:
- `GEMINI_SYSTEM_MD=/absolute/path/to/my-system.md`
- Relative paths are supported and resolved from the current working
directory.
- Tilde expansion is supported (e.g., `~/my-system.md`).
- Disable the override (use builtin prompt):
- `GEMINI_SYSTEM_MD=false` or `GEMINI_SYSTEM_MD=0` or unset the variable.
If the override is enabled but the target file does not exist, the CLI will
error with: `missing system prompt file '<path>'`.
## Quick examples
- Oneoff session using a project file:
- `GEMINI_SYSTEM_MD=1 gemini`
- Persist for a project using `.gemini/.env`:
- Create `.gemini/system.md`, then add to `.gemini/.env`:
- `GEMINI_SYSTEM_MD=1`
- Use a custom file under your home directory:
- `GEMINI_SYSTEM_MD=~/prompts/SYSTEM.md gemini`
## UI indicator
When `GEMINI_SYSTEM_MD` is active, the CLI shows a `|⌐■_■|` indicator in the UI
to signal custom systemprompt mode.
## Variable Substitution
When using a custom system prompt file, you can use the following variables to
dynamically include built-in content:
- `${AgentSkills}`: Injects a complete section (including header) of all
available agent skills.
- `${SubAgents}`: Injects a complete section (including header) of available
sub-agents.
- `${AvailableTools}`: Injects a bulleted list of all currently enabled tool
names.
- Tool Name Variables: Injects the actual name of a tool using the pattern:
`${toolName}_ToolName` (e.g., `${write_file_ToolName}`,
`${run_shell_command_ToolName}`).
This pattern is generated dynamically for all available tools.
### Example
```markdown
# Custom System Prompt
You are a helpful assistant. ${AgentSkills}
${SubAgents}
## Tooling
The following tools are available to you: ${AvailableTools}
You can use ${write_file_ToolName} to save logs.
```
## Export the default prompt (recommended)
Before overriding, export the current default prompt so you can review required
safety and workflow rules.
- Write the builtin prompt to the project default path:
- `GEMINI_WRITE_SYSTEM_MD=1 gemini`
- Or write to a custom path:
- `GEMINI_WRITE_SYSTEM_MD=~/prompts/DEFAULT_SYSTEM.md gemini`
This creates the file and writes the current builtin system prompt to it.
## Best practices: SYSTEM.md vs GEMINI.md
- SYSTEM.md (firmware):
- Nonnegotiable operational rules: safety, tooluse protocols, approvals, and
mechanics that keep the CLI reliable.
- Stable across tasks and projects (or per project when needed).
- GEMINI.md (strategy):
- Persona, goals, methodologies, and project/domain context.
- Evolves per task; relies on SYSTEM.md for safe execution.
Keep SYSTEM.md minimal but complete for safety and tool operation. Keep
GEMINI.md focused on highlevel guidance and project specifics.
## Troubleshooting
- Error: `missing system prompt file '…'`
- Ensure the referenced path exists and is readable.
- For `GEMINI_SYSTEM_MD=1|true`, create `./.gemini/system.md` in your project.
- Override not taking effect
- Confirm the variable is loaded (use `.gemini/.env` or export in your shell).
- Paths are resolved from the current working directory; try an absolute path.
- Restore defaults
- Unset `GEMINI_SYSTEM_MD` or set it to `0`/`false`.