Merge branch 'main' into fix/setup-github-command

Co-authored-by: Vedant Mahajan <Vedant.04.mahajan@gmail.com>

.gemini/commands/strict-development-rules.md

@@ -1,64 +1,142 @@
 # Gemini CLI Strict Development Rules
 
-These rules apply strictly to all code modifications and additions within the Gemini CLI project.
+These rules apply strictly to all code modifications and additions within the
+Gemini CLI project.
 
 ## Testing Guidelines
 
-*   **Async/Await**: Always use `waitFor` from `packages/cli/src/test-utils/async.ts` instead of `vi.waitFor` for all `waitFor` calls within `packages/cli`. NEVER use fixed waits (e.g., `await delay(100)`). Always use `waitFor` with a predicate to ensure tests are stable and fast. Using the wrong `waitFor` can result in flaky tests and `act` warnings.
-*   **React Testing**: Use `act` to wrap all blocks in tests that change component state. Use `render` or `renderWithProviders` from `packages/cli/src/test-utils/render.tsx` instead of `render` from `ink-testing-library` directly. This prevents spurious `act` warnings. If test cases specify providers directly, consider whether the existing `renderWithProviders` should be modified.
-*   **Snapshots**: Use `toMatchSnapshot` to verify that rendering works as expected rather than matching against the raw content of the output. When modifying snapshots, verify the changes are intentional and do not hide underlying bugs.
-*   **Parameterized Tests**: Use parameterized tests where it reduces duplicated lines. Give the parameters explicit types to ensure the tests are type-safe.
-*   **Mocks Management**:
-    *   Mock critical dependencies (`fs`, `os`, `child_process`) ONLY at the top of the file. Ideally, avoid mocking these dependencies altogether.
-    *   Reuse existing mocks and fakes rather than creating new ones.
-    *   Avoid mocking the file system whenever possible. If using the real file system is too difficult, consider writing an integration test instead.
-    *   Always call `vi.restoreAllMocks()` in `afterEach` to prevent test pollution.
-    *   Use `vi.useFakeTimers()` for tests involving time-based logic to avoid flakiness.
-*   **Typing in Tests**: Avoid using `any` in tests; prefer proper types or `unknown` with narrowing.
+- **Async/Await**: Always use `waitFor` from
+  `packages/cli/src/test-utils/async.ts` instead of `vi.waitFor` for all
+  `waitFor` calls within `packages/cli`. NEVER use fixed waits (e.g.,
+  `await delay(100)`). Always use `waitFor` with a predicate to ensure tests are
+  stable and fast. Using the wrong `waitFor` can result in flaky tests and `act`
+  warnings.
+- **React Testing**: Use `act` to wrap all blocks in tests that change component
+  state. Use `render` or `renderWithProviders` from
+  `packages/cli/src/test-utils/render.tsx` instead of `render` from
+  `ink-testing-library` directly. This prevents spurious `act` warnings. If test
+  cases specify providers directly, consider whether the existing
+  `renderWithProviders` should be modified.
+- **Snapshots**: Use `toMatchSnapshot` to verify that rendering works as
+  expected rather than matching against the raw content of the output. When
+  modifying snapshots, verify the changes are intentional and do not hide
+  underlying bugs.
+- **Parameterized Tests**: Use parameterized tests where it reduces duplicated
+  lines. Give the parameters explicit types to ensure the tests are type-safe.
+- **Mocks Management**:
+  - Mock critical dependencies (`fs`, `os`, `child_process`) ONLY at the top of
+    the file. Ideally, avoid mocking these dependencies altogether.
+  - Reuse existing mocks and fakes rather than creating new ones.
+  - Avoid mocking the file system whenever possible. If using the real file
+    system is too difficult, consider writing an integration test instead.
+  - Always call `vi.restoreAllMocks()` in `afterEach` to prevent test pollution.
+  - Use `vi.useFakeTimers()` for tests involving time-based logic to avoid
+    flakiness.
+- **Typing in Tests**: Avoid using `any` in tests; prefer proper types or
+  `unknown` with narrowing.
 
 ## React Guidelines (`packages/cli`)
 
-*   **`setState` and Side Effects**: NEVER trigger side effects from within the body of a `setState` callback. Use a reducer or `useRef` if necessary. These cases have historically introduced multiple bugs; typically, they should be resolved using a reducer.
-*   **Rendering**: Do not introduce infinite rendering loops. Avoid synchronous file I/O in React components as it will hang the UI. Do not implement new logic for custom string measurement or string truncation. Use Ink layout instead, leveraging `ResizeObserver` as needed.
-*   **Keyboard Handling**: Keyboard handling MUST go through `useKeyPress.ts` from the Gemini CLI package rather than the standard ink library. This library supports reporting multiple keyboard events sequentially in the same React frame (critical for slow terminals). Handling this correctly often requires reducers to ensure multiple state updates are handled gracefully without overriding values. Refer to `text-buffer.ts` for a canonical example.
-*   **Logging**: Do not leave `console.log`, `console.warn`, or `console.error` in the code.
-*   **State & Effects**: Ensure state initialization is explicit (e.g., use `undefined` rather than `true` as a default if the state is truly unknown). Carefully manage `useEffect` dependencies. Prefer a reducer whenever practical. NEVER disable `react-hooks/exhaustive-deps`; fix the code to correctly declare dependencies instead.
-*   **Context & Props**: Avoid excessive property drilling. Leverage existing providers, extend them, or propose a new one if necessary. Only use providers for properties that are consistent across the entire application.
-*   **Code Structure**: Avoid complex `if` statements where `switch` statements could be used. Keep `AppContainer` minimal; refactor complex logic into React hooks. Evaluate whether business logic should be added to `hookSystem.ts` or integrated into `packages/core` rather than `packages/cli`.
+- **`setState` and Side Effects**: NEVER trigger side effects from within the
+  body of a `setState` callback. Use a reducer or `useRef` if necessary. These
+  cases have historically introduced multiple bugs; typically, they should be
+  resolved using a reducer.
+- **Rendering**: Do not introduce infinite rendering loops. Avoid synchronous
+  file I/O in React components as it will hang the UI. Do not implement new
+  logic for custom string measurement or string truncation. Use Ink layout
+  instead, leveraging `ResizeObserver` as needed.
+- **Keyboard Handling**: Keyboard handling MUST go through `useKeyPress.ts` from
+  the Gemini CLI package rather than the standard ink library. This library
+  supports reporting multiple keyboard events sequentially in the same React
+  frame (critical for slow terminals). Handling this correctly often requires
+  reducers to ensure multiple state updates are handled gracefully without
+  overriding values. Refer to `text-buffer.ts` for a canonical example.
+- **Logging**: Do not leave `console.log`, `console.warn`, or `console.error` in
+  the code.
+- **State & Effects**: Ensure state initialization is explicit (e.g., use
+  `undefined` rather than `true` as a default if the state is truly unknown).
+  Carefully manage `useEffect` dependencies. Prefer a reducer whenever
+  practical. NEVER disable `react-hooks/exhaustive-deps`; fix the code to
+  correctly declare dependencies instead.
+- **Context & Props**: Avoid excessive property drilling. Leverage existing
+  providers, extend them, or propose a new one if necessary. Only use providers
+  for properties that are consistent across the entire application.
+- **Code Structure**: Avoid complex `if` statements where `switch` statements
+  could be used. Keep `AppContainer` minimal; refactor complex logic into React
+  hooks. Evaluate whether business logic should be added to `hookSystem.ts` or
+  integrated into `packages/core` rather than `packages/cli`.
 
 ## Core Guidelines (`packages/core`)
 
-*   **Services**: Implement services as classes with clear lifecycle management (e.g., `initialize()` methods). Services should be stateless where possible, or use the centralized `Storage` service for persistence.
-*   **Cross-Service Communication**: Prefer using the `coreEvents` bus (from `packages/core/src/utils/events.ts`) for asynchronous communication between services or to notify the UI of state changes. Avoid tight coupling between services.
-*   **Utilities**: Use `debugLogger` from `packages/core/src/utils/debugLogger.ts` for internal logging instead of `console`. Ensure all shell operations use `spawnAsync` from `packages/core/src/utils/shell-utils.ts` for consistent error handling and promise management. Handle filesystem errors gracefully using `isNodeError` from `packages/core/src/utils/errors.ts`.
-*   **Exports & Tooling**: Add new tools to `packages/core/src/tools/` and register them in `packages/core/src/tools/tool-registry.ts`. Export all new public services, utilities, and types from `packages/core/src/index.ts`.
+- **Services**: Implement services as classes with clear lifecycle management
+  (e.g., `initialize()` methods). Services should be stateless where possible,
+  or use the centralized `Storage` service for persistence.
+- **Cross-Service Communication**: Prefer using the `coreEvents` bus (from
+  `packages/core/src/utils/events.ts`) for asynchronous communication between
+  services or to notify the UI of state changes. Avoid tight coupling between
+  services.
+- **Utilities**: Use `debugLogger` from `packages/core/src/utils/debugLogger.ts`
+  for internal logging instead of `console`. Ensure all shell operations use
+  `spawnAsync` from `packages/core/src/utils/shell-utils.ts` for consistent
+  error handling and promise management. Handle filesystem errors gracefully
+  using `isNodeError` from `packages/core/src/utils/errors.ts`.
+- **Exports & Tooling**: Add new tools to `packages/core/src/tools/` and
+  register them in `packages/core/src/tools/tool-registry.ts`. Export all new
+  public services, utilities, and types from `packages/core/src/index.ts`.
 
 ## Architectural Audit (Package Boundaries)
 
-*   **Logic Placement**: Non-UI logic (e.g., model orchestration, tool implementation, git/filesystem operations) MUST reside in `packages/core`. `packages/cli` should ONLY contain UI/Ink components, command-line argument parsing, and user interaction logic.
-*   **Environment Isolation**: Core logic must not assume a TUI environment. Use the `ConfirmationBus` or `Output` abstractions for communicating with the user from Core.
-*   **Decoupling**: Actively look for opportunities to decouple services using `coreEvents`. If a service imports another just to notify it of a change, use an event instead.
+- **Logic Placement**: Non-UI logic (e.g., model orchestration, tool
+  implementation, git/filesystem operations) MUST reside in `packages/core`.
+  `packages/cli` should ONLY contain UI/Ink components, command-line argument
+  parsing, and user interaction logic.
+- **Environment Isolation**: Core logic must not assume a TUI environment. Use
+  the `ConfirmationBus` or `Output` abstractions for communicating with the user
+  from Core.
+- **Decoupling**: Actively look for opportunities to decouple services using
+  `coreEvents`. If a service imports another just to notify it of a change, use
+  an event instead.
 
 ## General Gemini CLI Design Principles
 
-*   **Settings**: Use settings for user-configurable options rather than adding new command line arguments. Add new settings to `packages/cli/src/config/settingsSchema.ts`. If a setting has `showInDialog: true`, it MUST be documented in `docs/get-started/configuration.md`. Ensure `requiresRestart` is correctly set.
-*   **Logging**: Use `debugLogger` for rethrown errors to avoid duplicate logging.
-*   **Keyboard Shortcuts**: Define all new keyboard shortcuts in `packages/cli/src/config/keyBindings.ts` and document them in `docs/cli/keyboard-shortcuts.md`. Be careful of keybindings that require the `Meta` key, as only certain meta key shortcuts are supported on Mac. Avoid function keys and shortcuts commonly bound in VSCode.
+- **Settings**: Use settings for user-configurable options rather than adding
+  new command line arguments. Add new settings to
+  `packages/cli/src/config/settingsSchema.ts`. If a setting has
+  `showInDialog: true`, it MUST be documented in
+  `docs/get-started/configuration.md`. Ensure `requiresRestart` is correctly
+  set.
+- **Logging**: Use `debugLogger` for rethrown errors to avoid duplicate logging.
+- **Keyboard Shortcuts**: Define all new keyboard shortcuts in
+  `packages/cli/src/config/keyBindings.ts` and document them in
+  `docs/cli/keyboard-shortcuts.md`. Be careful of keybindings that require the
+  `Meta` key, as only certain meta key shortcuts are supported on Mac. Avoid
+  function keys and shortcuts commonly bound in VSCode.
 
 ## TypeScript Best Practices
 
-*   Use `checkExhaustive` in the `default` clause of `switch` statements to ensure all cases are handled.
-*   Avoid using the non-null assertion operator (`!`) unless absolutely necessary.
-*   **STRICT TYPING**: Strictly forbid `any` and `unknown` in both CLI and Core packages. `unknown` is only allowed if it is immediately narrowed using type guards or Zod validation.
-*   NEVER disable `@typescript-eslint/no-floating-promises`.
-*   Avoid making types nullable unless strictly necessary, as it hurts readability.
+- Use `checkExhaustive` in the `default` clause of `switch` statements to ensure
+  all cases are handled.
+- Avoid using the non-null assertion operator (`!`) unless absolutely necessary.
+- **STRICT TYPING**: Strictly forbid `any` and `unknown` in both CLI and Core
+  packages. `unknown` is only allowed if it is immediately narrowed using type
+  guards or Zod validation.
+- NEVER disable `@typescript-eslint/no-floating-promises`.
+- Avoid making types nullable unless strictly necessary, as it hurts
+  readability.
 
 ## TUI Best Practices
 
-*   **Terminal Compatibility**: Consider how changes might behave differently across terminals (e.g., VSCode terminal, SSH, Kitty, default Mac terminal, iTerm2, Windows terminal). If modifying keyboard handling, integrate deeply with existing files like `KeypressContext.tsx` and `terminalCapabilityManager.ts`.
-*   **iTerm**: Be aware that `ITERM_SESSION_ID` may be present when users run VSCode from within iTerm, even if the terminal is not iTerm.
+- **Terminal Compatibility**: Consider how changes might behave differently
+  across terminals (e.g., VSCode terminal, SSH, Kitty, default Mac terminal,
+  iTerm2, Windows terminal). If modifying keyboard handling, integrate deeply
+  with existing files like `KeypressContext.tsx` and
+  `terminalCapabilityManager.ts`.
+- **iTerm**: Be aware that `ITERM_SESSION_ID` may be present when users run
+  VSCode from within iTerm, even if the terminal is not iTerm.
 
 ## Code Cleanup
 
-*   **Refactoring**: Actively clean up code duplication, technical debt, and boilerplate ("AI Slop") when working in the codebase.
-*   **Prompts**: Be aware that changes can impact the prompts sent to Gemini CLI and affect overall quality.
+- **Refactoring**: Actively clean up code duplication, technical debt, and
+  boilerplate ("AI Slop") when working in the codebase.
+- **Prompts**: Be aware that changes can impact the prompts sent to Gemini CLI
+  and affect overall quality.

.gemini/skills/docs-changelog/SKILL.md

@@ -109,23 +109,41 @@ detailed **highlights** section for the release-specific page.
 
 - **Target File**: `docs/changelogs/latest.md`
 - Perform the following edits on the target file:
-    1.  Update the version in the main header.
-    2.  Update the "Released:" date.
+    1.  Update the version in the main header. The line should read,
+        `# Latest stable release: {{version}}`
+    2.  Update the rease date. The line should read,
+        `Released: {{release_date_month_dd_yyyy}}`
     3.  **Prepend** the processed "What's Changed" list from the temporary file
-        to the existing "What's Changed" list in the file.
-    4.  In the "Full Changelog" URL, replace only the trailing version with the
-        new patch version.
+        to the existing "What's Changed" list in `latest.md`. Do not change or
+        replace the existing list, **only add** to the beginning of it.
+    4.  In the "Full Changelog", edit **only** the end of the URL. Identify the
+        last part of the URL that looks like `...{previous_version}` and update
+        it to be `...{version}`.
+
+        Example: assume the patch version is `v0.29.1`. Change
+        `Full Changelog: https://github.com/google-gemini/gemini-cli/compare/v0.28.2…v0.29.0`
+        to
+        `Full Changelog: https://github.com/google-gemini/gemini-cli/compare/v0.28.2…v0.29.1`
 
 ### B.2: Preview Patch (e.g., `v0.29.0-preview.3`)
 
 - **Target File**: `docs/changelogs/preview.md`
 - Perform the following edits on the target file:
-    1.  Update the version in the main header.
-    2.  Update the "Released:" date.
+    1.  Update the version in the main header. The line should read,
+        `# Preview release: {{version}}`
+    2.  Update the rease date. The line should read,
+        `Released: {{release_date_month_dd_yyyy}}`
     3.  **Prepend** the processed "What's Changed" list from the temporary file
-        to the existing "What's Changed" list in the file.
-    4.  In the "Full Changelog" URL, replace only the trailing version with the
-        new patch version.
+        to the existing "What's Changed" list in `preview.md`. Do not change or
+        replace the existing list, **only add** to the beginning of it.
+    4.  In the "Full Changelog", edit **only** the end of the URL. Identify the
+        last part of the URL that looks like `...{previous_version}` and update
+        it to be `...{version}`.
+
+        Example: assume the patch version is `v0.29.0-preview.1`. Change
+        `Full Changelog: https://github.com/google-gemini/gemini-cli/compare/v0.28.2…v0.29.0-preview.0`
+        to
+        `Full Changelog: https://github.com/google-gemini/gemini-cli/compare/v0.28.2…v0.29.0-preview.1`
 
 ---
 

.gemini/skills/pr-address-comments/SKILL.md

@@ -0,0 +1,13 @@
+---
+name: pr-address-comments
+description: Use this skill if the user asks you to help them address GitHub PR comments for their current branch of the Gemini CLI. Requires `gh` CLI tool.
+---
+You are helping the user address comments on their Pull Request. These comments may have come from an automated review agent or a team member.
+
+OBJECTIVE: Help the user review and address comments on their PR.
+
+# Comment Review Procedure
+
+1. Run the `scripts/fetch-pr-info.js` script to get PR info and state. MAKE SURE you read the entire output of the command, even if it gets truncated.
+2. Summarize the review status by analyzing the diff, commit log, and comments to see which still need to be addressed. Pay attention to the current user's comments. For resolved threads, summarize as a single line with a ✅. For open threads, provide a reference number e.g. [1] and the comment content.
+3. Present your summary of the feedback and current state and allow the user to guide you as to what to fix/address/skip. DO NOT begin fixing issues automatically.

.gemini/skills/pr-address-comments/scripts/fetch-pr-info.js

@@ -0,0 +1,160 @@
+#!/usr/bin/env node
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+/* eslint-env node */
+/* global console, process */
+
+import { exec } from 'node:child_process';
+import { promisify } from 'node:util';
+
+const execAsync = promisify(exec);
+
+async function run(cmd) {
+  try {
+    const { stdout } = await execAsync(cmd, {
+      encoding: 'utf8',
+      stdio: ['pipe', 'pipe', 'ignore'],
+    });
+    return stdout.trim();
+  } catch {
+    return null;
+  }
+}
+
+const IGNORE_MESSAGES = [
+  'thank you so much for your contribution to Gemini CLI!',
+  "I'm currently reviewing this pull request and will post my feedback shortly.",
+  'This pull request is being closed because it is not currently linked to an issue.',
+];
+
+const shouldIgnore = (body) => {
+  if (!body) return false;
+  return IGNORE_MESSAGES.some((msg) => body.includes(msg));
+};
+
+async function main() {
+  const branch = await run('git branch --show-current');
+  if (!branch) {
+    console.error('❌ Could not determine current git branch.');
+    process.exit(1);
+  }
+
+  const gqlQuery = `query($branch:String!){repository(name:"gemini-cli",owner:"google-gemini"){pullRequests(headRefName:$branch,first:100){nodes{id,number,state,comments(first:100){nodes{createdAt,isMinimized,minimizedReason,author{login},body,url,authorAssociation}},reviews(first:100){nodes{id,author{login},createdAt,isMinimized,minimizedReason,body,state,comments(first:30){nodes{id,replyTo{id},author{login},createdAt,body,isMinimized,minimizedReason,path,line,startLine,originalLine,originalStartLine}}}}}}}}`;
+
+  const [authInfo, diff, commits, rawJson] = await Promise.all([
+    run('gh auth status -a'),
+    run('gh pr diff'),
+    run(
+      'git fetch && git log origin/main..origin/$(git branch --show-current)',
+    ),
+    run(`gh api graphql -F branch="${branch}" -f query='${gqlQuery}'`),
+  ]);
+
+  if (!diff) {
+    console.error(`⚠️ No active PR found for branch: ${branch}`);
+    process.exit(1);
+  }
+
+  console.log(`\n# Current GitHub user info:\n\n${authInfo}\n`);
+  console.log(`\n# PR diff for current branch: ${branch}\n\n\`\`\``);
+  console.log(diff);
+  console.log('```');
+  console.log(
+    `\n# Commit history (origin/main..origin/${branch})\n\n${commits}`,
+  );
+
+  const data = JSON.parse(rawJson || '{}');
+  const prs = data?.data?.repository?.pullRequests?.nodes || [];
+
+  // Sort PRs by number descending so we check the newest one first
+  prs.sort((a, b) => b.number - a.number);
+
+  const pr = prs.find((p) => p.state === 'OPEN') || prs[0];
+
+  if (!pr) {
+    console.error('❌ No PR data found.');
+    process.exit(1);
+  }
+
+  console.log('\n# PR Feedback\n');
+
+  // 1. General PR Comments
+  const general = pr.comments.nodes.filter((c) => !shouldIgnore(c.body));
+  if (general.length > 0) {
+    console.log('\n💬 GENERAL COMMENTS:');
+    general.forEach((c) => {
+      const minimized = c.isMinimized
+        ? ` (Minimized: ${c.minimizedReason})`
+        : '';
+      console.log(
+        `[${c.createdAt}] [${c.author.login}]${minimized}: ${c.body}\n`,
+      );
+    });
+  }
+
+  // 2. Process ALL Review Comments into a single Thread Map
+  const allInlineComments = pr.reviews.nodes.flatMap((r) => r.comments.nodes);
+  const filteredInlines = allInlineComments.filter(
+    (c) => !shouldIgnore(c.body),
+  );
+
+  console.log('🔍 CODE REVIEWS & INLINE THREADS:');
+
+  // Print Review Summaries First
+  pr.reviews.nodes.forEach((review) => {
+    if (review.body && !shouldIgnore(review.body)) {
+      const icon = review.state === 'APPROVED' ? '✅' : '💬';
+      const minimized = review.isMinimized
+        ? ` (Minimized: ${review.minimizedReason})`
+        : '';
+      console.log(
+        `\n${icon} ${review.state} by ${review.author.login} at ${review.createdAt}${minimized}: "${review.body}"`,
+      );
+    }
+  });
+
+  // Build and Print Threads
+  const topLevelThreads = filteredInlines.filter((c) => !c.replyTo);
+
+  const printThread = (parentId, depth = 1) => {
+    const indent = '  '.repeat(depth);
+    filteredInlines
+      .filter((c) => c.replyTo?.id === parentId)
+      .forEach((reply) => {
+        const minimized = reply.isMinimized
+          ? ` (Minimized: ${reply.minimizedReason})`
+          : '';
+        console.log(
+          `${indent}↳ [${reply.createdAt}] ${reply.author.login}${minimized}: ${reply.body}`,
+        );
+        printThread(reply.id, depth + 1);
+      });
+  };
+
+  topLevelThreads.forEach((c) => {
+    const start = c.startLine || c.originalStartLine;
+    const end = c.line || c.originalLine;
+    const range = start && end && start !== end ? `${start}-${end}` : end || '';
+    const fileInfo = c.path
+      ? `(${c.path}${range ? `:${range}` : ''}) `
+      : range
+        ? `(Line ${range}) `
+        : '';
+    const minimized = c.isMinimized ? ` (Minimized: ${c.minimizedReason})` : '';
+    console.log(
+      `\n💬 ${minimized}${c.author.login} | ${c.createdAt} ${fileInfo}\n${c.body}`,
+    );
+    printThread(c.id);
+  });
+
+  console.log('\n');
+}
+
+main().catch((err) => {
+  console.error('❌ Unexpected error:', err);
+  process.exit(1);
+});

.github/actions/push-sandbox/action.yml

@@ -77,6 +77,14 @@ runs:
           --image google/gemini-cli-sandbox:${{ steps.image_tag.outputs.FINAL_TAG }} \
           --output-file final_image_uri.txt
         echo "uri=$(cat final_image_uri.txt)" >> $GITHUB_OUTPUT
+    - name: 'verify'
+      shell: 'bash'
+      run: |-
+        docker run --rm --entrypoint sh "${{ steps.docker_build.outputs.uri }}" -lc '
+          set -e
+          node -e "const fs=require(\"node:fs\"); JSON.parse(fs.readFileSync(\"/usr/local/share/npm-global/lib/node_modules/@google/gemini-cli/package.json\",\"utf8\")); JSON.parse(fs.readFileSync(\"/usr/local/share/npm-global/lib/node_modules/@google/gemini-cli-core/package.json\",\"utf8\"));"
+          /usr/local/share/npm-global/bin/gemini --version >/dev/null
+        '
     - name: 'publish'
       shell: 'bash'
       if: "${{ inputs.dry-run != 'true' }}"

.github/scripts/pr-triage.sh

@@ -22,7 +22,7 @@ get_issue_labels() {
     # Check cache
     case "${ISSUE_LABELS_CACHE_FLAT}" in
         *"|${ISSUE_NUM}:"*) 
-            local suffix="${ISSUE_LABELS_CACHE_FLAT#*|${ISSUE_NUM}:}"
+            local suffix="${ISSUE_LABELS_CACHE_FLAT#*|"${ISSUE_NUM}":}"
             echo "${suffix%%|*}"
             return
             ;; 

.github/workflows/chained_e2e.yml

@@ -224,8 +224,6 @@ jobs:
     if: |
       always() && (needs.merge_queue_skipper.result !='success' || needs.merge_queue_skipper.outputs.skip != 'true')
     runs-on: 'gemini-cli-windows-16-core'
-    continue-on-error: true
-
     steps:
       - name: 'Checkout'
         uses: 'actions/checkout@08eba0b27e820071cde6df949e0beb9ba4906955' # ratchet:actions/checkout@v5
@@ -315,6 +313,7 @@ jobs:
     needs:
       - 'e2e_linux'
       - 'e2e_mac'
+      - 'e2e_windows'
       - 'evals'
       - 'merge_queue_skipper'
     runs-on: 'gemini-cli-ubuntu-16-core'
@@ -323,6 +322,7 @@ jobs:
         run: |
           if [[ ${{ needs.e2e_linux.result }} != 'success' || \
                ${{ needs.e2e_mac.result }} != 'success' || \
+               ${{ needs.e2e_windows.result }} != 'success' || \
                ${{ needs.evals.result }} != 'success' ]]; then
             echo "One or more E2E jobs failed."
             exit 1

.github/workflows/ci.yml

@@ -360,7 +360,6 @@ jobs:
     runs-on: 'gemini-cli-windows-16-core'
     needs: 'merge_queue_skipper'
     if: "${{needs.merge_queue_skipper.outputs.skip == 'false'}}"
-    continue-on-error: true
     timeout-minutes: 60
     strategy:
       matrix:
@@ -458,6 +457,7 @@ jobs:
       - 'link_checker'
       - 'test_linux'
       - 'test_mac'
+      - 'test_windows'
       - 'codeql'
       - 'bundle_size'
     runs-on: 'gemini-cli-ubuntu-16-core'
@@ -468,6 +468,7 @@ jobs:
                (${{ needs.link_checker.result }} != 'success' && ${{ needs.link_checker.result }} != 'skipped') || \
                (${{ needs.test_linux.result }} != 'success' && ${{ needs.test_linux.result }} != 'skipped') || \
                (${{ needs.test_mac.result }} != 'success' && ${{ needs.test_mac.result }} != 'skipped') || \
+               (${{ needs.test_windows.result }} != 'success' && ${{ needs.test_windows.result }} != 'skipped') || \
                (${{ needs.codeql.result }} != 'success' && ${{ needs.codeql.result }} != 'skipped') || \
                (${{ needs.bundle_size.result }} != 'success' && ${{ needs.bundle_size.result }} != 'skipped') ]]; then
             echo "One or more CI jobs failed."

.github/workflows/evals-nightly.yml

@@ -27,6 +27,7 @@ jobs:
       fail-fast: false
       matrix:
         model:
+          - 'gemini-3.1-pro-preview-customtools'
           - 'gemini-3-pro-preview'
           - 'gemini-3-flash-preview'
           - 'gemini-2.5-pro'

.github/workflows/gemini-automated-issue-triage.yml

@@ -155,7 +155,10 @@ jobs:
               "telemetry": {
                 "enabled": true,
                 "target": "gcp"
-              }
+              },
+              "coreTools": [
+                "run_shell_command(echo)"
+              ],
             }
           prompt: |-
             ## Role
@@ -284,8 +287,21 @@ jobs:
                   return;
                 }
               } else {
-                core.setFailed(`Output is not valid JSON and does not contain a JSON markdown block.\nRaw output: ${rawOutput}`);
-                return;
+                // If no markdown block, try to find a raw JSON object in the output.
+                // The CLI may include debug/log lines (e.g. telemetry init, YOLO mode)
+                // before the actual JSON response.
+                const jsonObjectMatch = rawOutput.match(/(\{[\s\S]*"labels_to_set"[\s\S]*\})/);
+                if (jsonObjectMatch) {
+                  try {
+                    parsedLabels = JSON.parse(jsonObjectMatch[0]);
+                  } catch (extractError) {
+                    core.setFailed(`Found JSON-like content but failed to parse: ${extractError.message}\nRaw output: ${rawOutput}`);
+                    return;
+                  }
+                } else {
+                  core.setFailed(`Output is not valid JSON and does not contain extractable JSON.\nRaw output: ${rawOutput}`);
+                  return;
+                }
               }
             }
 

.github/workflows/gemini-self-assign-issue.yml

@@ -48,6 +48,24 @@ jobs:
             const repo = context.repo.repo;
             const MAX_ISSUES_ASSIGNED = 3;
 
+            const issue = await github.rest.issues.get({
+              owner: context.repo.owner,
+              repo: context.repo.repo,
+              issue_number: issueNumber,
+            });
+
+            const hasHelpWantedLabel = issue.data.labels.some(label => label.name === 'help wanted');
+
+            if (!hasHelpWantedLabel) {
+              await github.rest.issues.createComment({
+                owner: owner,
+                repo: repo,
+                issue_number: issueNumber,
+                body: `👋 @${commenter}, thanks for your interest in this issue! We're reserving self-assignment for issues that have been marked with the \`help wanted\` label. Feel free to check out our list of [issues that need attention](https://github.com/google-gemini/gemini-cli/issues?q=is%3Aissue+is%3Aopen+label%3A%22help+wanted%22).`
+              });
+              return;
+            }
+
             // Search for open issues already assigned to the commenter in this repo
             const { data: assignedIssues } = await github.rest.search.issuesAndPullRequests({
               q: `is:issue repo:${owner}/${repo} assignee:${commenter} is:open`,
@@ -64,13 +82,6 @@ jobs:
               return; // exit
             }
 
-            // Check if the issue is already assigned
-            const issue = await github.rest.issues.get({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              issue_number: issueNumber,
-            });
-
             if (issue.data.assignees.length > 0) {
               // Comment that it's already assigned
               await github.rest.issues.createComment({

.github/workflows/pr-rate-limiter.yaml

@@ -0,0 +1,29 @@
+# yaml-language-server: $schema=https://json.schemastore.org/github-workflow.json
+
+name: 'PR rate limiter'
+
+permissions: {}
+
+on:
+  pull_request_target:
+    types:
+      - 'opened'
+      - 'reopened'
+
+jobs:
+  limit:
+    runs-on: 'gemini-cli-ubuntu-16-core'
+    permissions:
+      contents: 'read'
+      pull-requests: 'write'
+    steps:
+      - name: 'Limit open pull requests per user'
+        uses: 'Homebrew/actions/limit-pull-requests@9ceb7934560eb61d131dde205a6c2d77b2e1529d' # master
+        with:
+          except-author-associations: 'MEMBER,OWNER,COLLABORATOR'
+          comment-limit: 8
+          comment: >
+            You already have 7 pull requests open. Please work on getting
+            existing PRs merged before opening more.
+          close-limit: 8
+          close: true

CONTRIBUTING.md

@@ -372,8 +372,7 @@ specific debug settings.
 
 ### React DevTools
 
-To debug the CLI's React-based UI, you can use React DevTools. Ink, the library
-used for the CLI's interface, is compatible with React DevTools version 4.x.
+To debug the CLI's React-based UI, you can use React DevTools.
 
 1.  **Start the Gemini CLI in development mode:**
 
@@ -381,20 +380,20 @@ used for the CLI's interface, is compatible with React DevTools version 4.x.
     DEV=true npm start
     ```
 
-2.  **Install and run React DevTools version 4.28.5 (or the latest compatible
-    4.x version):**
+2.  **Install and run React DevTools version 6 (which matches the CLI's
+    `react-devtools-core`):**
 
     You can either install it globally:
 
     ```bash
-    npm install -g react-devtools@4.28.5
+    npm install -g react-devtools@6
     react-devtools
     ```
 
     Or run it directly using npx:
 
     ```bash
-    npx react-devtools@4.28.5
+    npx react-devtools@6
     ```
 
     Your running CLI application should then connect to React DevTools.
@@ -546,7 +545,7 @@ Before submitting your documentation pull request, please:
 
 If you have questions about contributing documentation:
 
-- Check our [FAQ](/docs/faq.md).
+- Check our [FAQ](/docs/resources/faq.md).
 - Review existing documentation for examples.
 - Open [an issue](https://github.com/google-gemini/gemini-cli/issues) to discuss
   your proposed changes.

Dockerfile

@@ -42,7 +42,10 @@ USER node
 # install gemini-cli and clean up
 COPY packages/cli/dist/google-gemini-cli-*.tgz /tmp/gemini-cli.tgz
 COPY packages/core/dist/google-gemini-cli-core-*.tgz /tmp/gemini-core.tgz
-RUN npm install -g /tmp/gemini-cli.tgz /tmp/gemini-core.tgz \
+RUN npm install -g /tmp/gemini-core.tgz \
+  && npm install -g /tmp/gemini-cli.tgz \
+  && node -e "const fs=require('node:fs'); JSON.parse(fs.readFileSync('/usr/local/share/npm-global/lib/node_modules/@google/gemini-cli/package.json','utf8')); JSON.parse(fs.readFileSync('/usr/local/share/npm-global/lib/node_modules/@google/gemini-cli-core/package.json','utf8'));" \
+  && gemini --version > /dev/null \
   && npm cache clean --force \
   && rm -f /tmp/gemini-{cli,core}.tgz
 

README.md

@@ -382,7 +382,7 @@ See the [Uninstall Guide](docs/cli/uninstall.md) for removal instructions.
 ## 📄 Legal
 
 - **License**: [Apache License 2.0](LICENSE)
-- **Terms of Service**: [Terms & Privacy](./docs/tos-privacy.md)
+- **Terms of Service**: [Terms & Privacy](./docs/resources/tos-privacy.md)
 - **Security**: [Security Policy](SECURITY.md)
 
 ---

docs/architecture.md

@@ -1,80 +0,0 @@
-# Gemini CLI Architecture Overview
-
-This document provides a high-level overview of the Gemini CLI's architecture.
-
-## Core components
-
-The Gemini CLI is primarily composed of two main packages, along with a suite of
-tools that can be used by the system in the course of handling command-line
-input:
-
-1.  **CLI package (`packages/cli`):**
-    - **Purpose:** This contains the user-facing portion of the Gemini CLI, such
-      as handling the initial user input, presenting the final output, and
-      managing the overall user experience.
-    - **Key functions contained in the package:**
-      - [Input processing](/docs/cli/commands)
-      - History management
-      - Display rendering
-      - [Theme and UI customization](/docs/cli/themes)
-      - [CLI configuration settings](/docs/get-started/configuration)
-
-2.  **Core package (`packages/core`):**
-    - **Purpose:** This acts as the backend for the Gemini CLI. It receives
-      requests sent from `packages/cli`, orchestrates interactions with the
-      Gemini API, and manages the execution of available tools.
-    - **Key functions contained in the package:**
-      - API client for communicating with the Google Gemini API
-      - Prompt construction and management
-      - Tool registration and execution logic
-      - State management for conversations or sessions
-      - Server-side configuration
-
-3.  **Tools (`packages/core/src/tools/`):**
-    - **Purpose:** These are individual modules that extend the capabilities of
-      the Gemini model, allowing it to interact with the local environment
-      (e.g., file system, shell commands, web fetching).
-    - **Interaction:** `packages/core` invokes these tools based on requests
-      from the Gemini model.
-
-## Interaction flow
-
-A typical interaction with the Gemini CLI follows this flow:
-
-1.  **User input:** The user types a prompt or command into the terminal, which
-    is managed by `packages/cli`.
-2.  **Request to core:** `packages/cli` sends the user's input to
-    `packages/core`.
-3.  **Request processed:** The core package:
-    - Constructs an appropriate prompt for the Gemini API, possibly including
-      conversation history and available tool definitions.
-    - Sends the prompt to the Gemini API.
-4.  **Gemini API response:** The Gemini API processes the prompt and returns a
-    response. This response might be a direct answer or a request to use one of
-    the available tools.
-5.  **Tool execution (if applicable):**
-    - When the Gemini API requests a tool, the core package prepares to execute
-      it.
-    - If the requested tool can modify the file system or execute shell
-      commands, the user is first given details of the tool and its arguments,
-      and the user must approve the execution.
-    - Read-only operations, such as reading files, might not require explicit
-      user confirmation to proceed.
-    - Once confirmed, or if confirmation is not required, the core package
-      executes the relevant action within the relevant tool, and the result is
-      sent back to the Gemini API by the core package.
-    - The Gemini API processes the tool result and generates a final response.
-6.  **Response to CLI:** The core package sends the final response back to the
-    CLI package.
-7.  **Display to user:** The CLI package formats and displays the response to
-    the user in the terminal.
-
-## Key design principles
-
-- **Modularity:** Separating the CLI (frontend) from the Core (backend) allows
-  for independent development and potential future extensions (e.g., different
-  frontends for the same backend).
-- **Extensibility:** The tool system is designed to be extensible, allowing new
-  capabilities to be added.
-- **User experience:** The CLI focuses on providing a rich and interactive
-  terminal experience.

docs/changelogs/index.md

@@ -295,7 +295,8 @@ on GitHub.
 - **Experimental permission improvements:** We are now experimenting with a new
   policy engine in Gemini CLI. This allows users and administrators to create
   fine-grained policy for tool calls. Currently behind a flag. See
-  [policy engine documentation](../core/policy-engine.md) for more information.
+  [policy engine documentation](../reference/policy-engine.md) for more
+  information.
   - Blog:
     [https://allen.hutchison.org/2025/11/26/the-guardrails-of-autonomy/](https://allen.hutchison.org/2025/11/26/the-guardrails-of-autonomy/)
 - **Gemini 3 support for paid:** Gemini 3 support has been rolled out to all API

docs/changelogs/preview.md

@@ -1,6 +1,6 @@
-# Preview release: v0.30.0-preview.0
+# Preview release: v0.30.0-preview.5
 
-Released: February 17, 2026
+Released: February 24, 2026
 
 Our preview release includes the latest, new, and experimental features. This
 release may not be as stable as our [latest weekly release](latest.md).
@@ -25,6 +25,14 @@ npm install -g @google/gemini-cli@preview
 
 ## What's Changed
 
+- fix(patch): cherry-pick 2c1d6f8 to release/v0.30.0-preview.4-pr-19369 to patch
+  version v0.30.0-preview.4 and create version 0.30.0-preview.5 by
+  @gemini-cli-robot in
+  [#20086](https://github.com/google-gemini/gemini-cli/pull/20086)
+- fix(patch): cherry-pick 261788c to release/v0.30.0-preview.0-pr-19453 to patch
+  version v0.30.0-preview.0 and create version 0.30.0-preview.1 by
+  @gemini-cli-robot in
+  [#19490](https://github.com/google-gemini/gemini-cli/pull/19490)
 - feat(ux): added text wrapping capabilities to markdown tables by @devr0306 in
   [#18240](https://github.com/google-gemini/gemini-cli/pull/18240)
 - Revert "fix(mcp): ensure MCP transport is closed to prevent memory leaks" by
@@ -306,5 +314,5 @@ npm install -g @google/gemini-cli@preview
 - feat(core): experimental in-progress steering hints (1 of 3) by @joshualitt in
   [#19008](https://github.com/google-gemini/gemini-cli/pull/19008)
 
-**Full Changelog**:
-https://github.com/google-gemini/gemini-cli/compare/v0.29.0-preview.5...v0.30.0-preview.0
+**Full changelog**:
+https://github.com/google-gemini/gemini-cli/compare/v0.29.0-preview.5...v0.30.0-preview.5

docs/cli/cli-reference.md

@@ -26,29 +26,29 @@ and parameters.
 
 ## CLI Options
 
-| Option                           | Alias | Type    | Default   | Description                                                                                                                                                       |
-| -------------------------------- | ----- | ------- | --------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------- |
-| `--debug`                        | `-d`  | boolean | `false`   | Run in debug mode with verbose logging                                                                                                                            |
-| `--version`                      | `-v`  | -       | -         | Show CLI version number and exit                                                                                                                                  |
-| `--help`                         | `-h`  | -       | -         | Show help information                                                                                                                                             |
-| `--model`                        | `-m`  | string  | `auto`    | Model to use. See [Model Selection](#model-selection) for available values.                                                                                       |
-| `--prompt`                       | `-p`  | string  | -         | Prompt text. Appended to stdin input if provided. **Deprecated:** Use positional arguments instead.                                                               |
-| `--prompt-interactive`           | `-i`  | string  | -         | Execute prompt and continue in interactive mode                                                                                                                   |
-| `--sandbox`                      | `-s`  | boolean | `false`   | Run in a sandboxed environment for safer execution                                                                                                                |
-| `--approval-mode`                | -     | string  | `default` | Approval mode for tool execution. Choices: `default`, `auto_edit`, `yolo`                                                                                         |
-| `--yolo`                         | `-y`  | boolean | `false`   | **Deprecated.** Auto-approve all actions. Use `--approval-mode=yolo` instead.                                                                                     |
-| `--experimental-acp`             | -     | boolean | -         | Start in ACP (Agent Code Pilot) mode. **Experimental feature.**                                                                                                   |
-| `--experimental-zed-integration` | -     | boolean | -         | Run in Zed editor integration mode. **Experimental feature.**                                                                                                     |
-| `--allowed-mcp-server-names`     | -     | array   | -         | Allowed MCP server names (comma-separated or multiple flags)                                                                                                      |
-| `--allowed-tools`                | -     | array   | -         | **Deprecated.** Use the [Policy Engine](../core/policy-engine.md) instead. Tools that are allowed to run without confirmation (comma-separated or multiple flags) |
-| `--extensions`                   | `-e`  | array   | -         | List of extensions to use. If not provided, all extensions are enabled (comma-separated or multiple flags)                                                        |
-| `--list-extensions`              | `-l`  | boolean | -         | List all available extensions and exit                                                                                                                            |
-| `--resume`                       | `-r`  | string  | -         | Resume a previous session. Use `"latest"` for most recent or index number (e.g. `--resume 5`)                                                                     |
-| `--list-sessions`                | -     | boolean | -         | List available sessions for the current project and exit                                                                                                          |
-| `--delete-session`               | -     | string  | -         | Delete a session by index number (use `--list-sessions` to see available sessions)                                                                                |
-| `--include-directories`          | -     | array   | -         | Additional directories to include in the workspace (comma-separated or multiple flags)                                                                            |
-| `--screen-reader`                | -     | boolean | -         | Enable screen reader mode for accessibility                                                                                                                       |
-| `--output-format`                | `-o`  | string  | `text`    | The format of the CLI output. Choices: `text`, `json`, `stream-json`                                                                                              |
+| Option                           | Alias | Type    | Default   | Description                                                                                                                                                            |
+| -------------------------------- | ----- | ------- | --------- | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| `--debug`                        | `-d`  | boolean | `false`   | Run in debug mode with verbose logging                                                                                                                                 |
+| `--version`                      | `-v`  | -       | -         | Show CLI version number and exit                                                                                                                                       |
+| `--help`                         | `-h`  | -       | -         | Show help information                                                                                                                                                  |
+| `--model`                        | `-m`  | string  | `auto`    | Model to use. See [Model Selection](#model-selection) for available values.                                                                                            |
+| `--prompt`                       | `-p`  | string  | -         | Prompt text. Appended to stdin input if provided. **Deprecated:** Use positional arguments instead.                                                                    |
+| `--prompt-interactive`           | `-i`  | string  | -         | Execute prompt and continue in interactive mode                                                                                                                        |
+| `--sandbox`                      | `-s`  | boolean | `false`   | Run in a sandboxed environment for safer execution                                                                                                                     |
+| `--approval-mode`                | -     | string  | `default` | Approval mode for tool execution. Choices: `default`, `auto_edit`, `yolo`                                                                                              |
+| `--yolo`                         | `-y`  | boolean | `false`   | **Deprecated.** Auto-approve all actions. Use `--approval-mode=yolo` instead.                                                                                          |
+| `--experimental-acp`             | -     | boolean | -         | Start in ACP (Agent Code Pilot) mode. **Experimental feature.**                                                                                                        |
+| `--experimental-zed-integration` | -     | boolean | -         | Run in Zed editor integration mode. **Experimental feature.**                                                                                                          |
+| `--allowed-mcp-server-names`     | -     | array   | -         | Allowed MCP server names (comma-separated or multiple flags)                                                                                                           |
+| `--allowed-tools`                | -     | array   | -         | **Deprecated.** Use the [Policy Engine](../reference/policy-engine.md) instead. Tools that are allowed to run without confirmation (comma-separated or multiple flags) |
+| `--extensions`                   | `-e`  | array   | -         | List of extensions to use. If not provided, all extensions are enabled (comma-separated or multiple flags)                                                             |
+| `--list-extensions`              | `-l`  | boolean | -         | List all available extensions and exit                                                                                                                                 |
+| `--resume`                       | `-r`  | string  | -         | Resume a previous session. Use `"latest"` for most recent or index number (e.g. `--resume 5`)                                                                          |
+| `--list-sessions`                | -     | boolean | -         | List available sessions for the current project and exit                                                                                                               |
+| `--delete-session`               | -     | string  | -         | Delete a session by index number (use `--list-sessions` to see available sessions)                                                                                     |
+| `--include-directories`          | -     | array   | -         | Additional directories to include in the workspace (comma-separated or multiple flags)                                                                                 |
+| `--screen-reader`                | -     | boolean | -         | Enable screen reader mode for accessibility                                                                                                                            |
+| `--output-format`                | `-o`  | string  | `text`    | The format of the CLI output. Choices: `text`, `json`, `stream-json`                                                                                                   |
 
 ## Model selection
 

docs/cli/enterprise.md

@@ -20,7 +20,7 @@ The most powerful tools for enterprise administration are the system-wide
 settings files. These files allow you to define a baseline configuration
 (`system-defaults.json`) and a set of overrides (`settings.json`) that apply to
 all users on a machine. For a complete overview of configuration options, see
-the [Configuration documentation](../get-started/configuration.md).
+the [Configuration documentation](../reference/configuration.md).
 
 Settings are merged from four files. The precedence order for single-value
 settings (like `theme`) is:
@@ -224,8 +224,8 @@ gemini
 
 You can significantly enhance security by controlling which tools the Gemini
 model can use. This is achieved through the `tools.core` setting and the
-[Policy Engine](../core/policy-engine.md). For a list of available tools, see
-the [Tools documentation](../tools/index.md).
+[Policy Engine](../reference/policy-engine.md). For a list of available tools,
+see the [Tools documentation](../tools/index.md).
 
 ### Allowlisting with `coreTools`
 
@@ -245,8 +245,8 @@ on the approved list.
 
 ### Blocklisting with `excludeTools` (Deprecated)
 
-> **Deprecated:** Use the [Policy Engine](../core/policy-engine.md) for more
-> robust control.
+> **Deprecated:** Use the [Policy Engine](../reference/policy-engine.md) for
+> more robust control.
 
 Alternatively, you can add specific tools that are considered dangerous in your
 environment to a blocklist.
@@ -289,8 +289,8 @@ unintended tool execution.
 ## Managing custom tools (MCP servers)
 
 If your organization uses custom tools via
-[Model-Context Protocol (MCP) servers](../core/tools-api.md), it is crucial to
-understand how server configurations are managed to apply security policies
+[Model-Context Protocol (MCP) servers](../reference/tools-api.md), it is crucial
+to understand how server configurations are managed to apply security policies
 effectively.
 
 ### How MCP server configurations are merged

docs/cli/gemini-md.md

@@ -88,7 +88,7 @@ More content here.
 @../shared/style-guide.md
 ```
 
-For more details, see the [Memory Import Processor](../core/memport.md)
+For more details, see the [Memory Import Processor](../reference/memport.md)
 documentation.
 
 ## Customize the context file name

docs/cli/index.md

@@ -1,123 +0,0 @@
-# Using Gemini CLI
-
-Gemini CLI is a terminal-first interface that brings the power of Gemini AI
-models directly into your development workflow. It lets you interact with AI
-using your local files, shell environment, and project context, creating a
-bridge between generative AI and your system tools.
-
-## User guides
-
-These guides provide step-by-step instructions and practical examples for using
-Gemini CLI in your daily development workflow.
-
-- **[Quickstart](../get-started/index.md):** Get up and running with Gemini CLI
-  in minutes.
-- **[Examples](../get-started/examples.md):** See practical examples of Gemini
-  CLI in action.
-- **[Get started with skills](./tutorials/skills-getting-started.md):** Learn
-  how to use and manage specialized expertise.
-- **[File management](./tutorials/file-management.md):** How to include, search,
-  and modify local files.
-- **[Set up an MCP server](./tutorials/mcp-setup.md):** Configure Model Context
-  Protocol servers for custom tools.
-- **[Manage context and memory](./tutorials/memory-management.md):** Manage
-  persistent instructions and individual facts.
-- **[Manage sessions and history](./tutorials/session-management.md):** Resume,
-  manage, and rewind your conversations.
-- **[Execute shell commands](./tutorials/shell-commands.md):** Execute system
-  commands safely directly from your prompt.
-- **[Plan tasks with todos](./tutorials/task-planning.md):** Using todos for
-  complex, multi-step agent requests.
-- **[Web search and fetch](./tutorials/web-tools.md):** Searching and fetching
-  content from the web.
-
-## Features
-
-Technical reference documentation for each capability of Gemini CLI.
-
-- **[/about](../cli/commands.md#about):** Show version info.
-- **[/auth](../cli/commands.md#auth):** Change authentication method.
-- **[/bug](../cli/commands.md#bug):** File an issue about Gemini CLI.
-- **[/chat](../cli/commands.md#chat):** Save and resume conversation history.
-- **[/clear](../cli/commands.md#clear):** Clear the terminal screen.
-- **[/compress](../cli/commands.md#compress):** Replace context with a summary.
-- **[/copy](../cli/commands.md#copy):** Copy output to clipboard.
-- **[/directory](../cli/commands.md#directory-or-dir):** Manage workspace
-  directories.
-- **[/docs](../cli/commands.md#docs):** Open documentation in browser.
-- **[/editor](../cli/commands.md#editor):** Select preferred editor.
-- **[/extensions](../cli/commands.md#extensions):** List active extensions.
-- **[/help](../cli/commands.md#help-or):** Display help information.
-- **[/hooks](../hooks/index.md):** Manage hooks for lifecycle events.
-- **[/ide](../ide-integration/index.md):** Manage IDE integration.
-- **[/init](../cli/commands.md#init):** Create a GEMINI.md context file.
-- **[/mcp](../tools/mcp-server.md):** Manage Model Context Protocol servers.
-- **[/memory](../cli/commands.md#memory):** Manage instructional context.
-- **[/model](./model.md):** Choose Gemini model.
-- **[/policies](../cli/commands.md#policies):** Manage security policies.
-- **[/privacy](../cli/commands.md#privacy):** Display privacy notice.
-- **[/quit](../cli/commands.md#quit-or-exit):** Exit Gemini CLI.
-- **[/restore](../cli/commands.md#restore):** Restore file state.
-- **[/resume](../cli/commands.md#resume):** Browse and resume sessions.
-- **[/rewind](./rewind.md):** Navigate backward through history.
-- **[/settings](./settings.md):** Open settings editor.
-- **[/setup-github](../cli/commands.md#setup-github):** Set up GitHub Actions.
-- **[/shells](../cli/commands.md#shells-or-bashes):** Toggle background shells
-  view.
-- **[/skills](./skills.md):** Manage Agent Skills.
-- **[/stats](../cli/commands.md#stats):** Display session statistics.
-- **[/terminal-setup](../cli/commands.md#terminal-setup):** Configure
-  keybindings.
-- **[/theme](./themes.md):** Change visual theme.
-- **[/tools](../cli/commands.md#tools):** Display list of available tools.
-- **[/vim](../cli/commands.md#vim):** Toggle vim mode.
-- **[Activate skill (tool)](../tools/activate-skill.md):** Internal mechanism
-  for loading expert procedures.
-- **[Ask user (tool)](../tools/ask-user.md):** Internal dialog system for
-  clarification.
-- **[Checkpointing](./checkpointing.md):** Automatic session snapshots.
-- **[File system (tool)](../tools/file-system.md):** Technical details for local
-  file operations.
-- **[Headless mode](./headless.md):** Programmatic and scripting interface.
-- **[Internal documentation (tool)](../tools/internal-docs.md):** Technical
-  lookup for CLI features.
-- **[Memory (tool)](../tools/memory.md):** Storage details for persistent facts.
-- **[Model routing](./model-routing.md):** Automatic fallback resilience.
-- **[Plan mode (experimental)](./plan-mode.md):** Use a safe, read-only mode for
-  planning complex changes.
-- **[Sandboxing](./sandbox.md):** Isolate tool execution.
-- **[Shell (tool)](../tools/shell.md):** Detailed system execution parameters.
-- **[Telemetry](./telemetry.md):** Usage and performance metric details.
-- **[Todo (tool)](../tools/todos.md):** Progress tracking specification.
-- **[Token caching](./token-caching.md):** Performance optimization.
-- **[Web fetch (tool)](../tools/web-fetch.md):** URL retrieval and extraction
-  details.
-- **[Web search (tool)](../tools/web-search.md):** Google Search integration
-  technicals.
-
-## Configuration
-
-Settings and customization options for Gemini CLI.
-
-- **[Custom commands](./custom-commands.md):** Personalized shortcuts.
-- **[Enterprise configuration](./enterprise.md):** Professional environment
-  controls.
-- **[Ignore files (.geminiignore)](./gemini-ignore.md):** Exclusion pattern
-  reference.
-- **[Model configuration](./generation-settings.md):** Fine-tune generation
-  parameters like temperature and thinking budget.
-- **[Project context (GEMINI.md)](./gemini-md.md):** Technical hierarchy of
-  context files.
-- **[Settings](./settings.md):** Full `settings.json` schema.
-- **[System prompt override](./system-prompt.md):** Instruction replacement
-  logic.
-- **[Themes](./themes.md):** UI personalization technical guide.
-- **[Trusted folders](./trusted-folders.md):** Security permission logic.
-
-## Next steps
-
-- Explore the [Command reference](./commands.md) to learn about all available
-  slash commands.
-- Read about [Project context](./gemini-md.md) to understand how to provide
-  persistent instructions to the model.
-- See the [CLI reference](./cli-reference.md) for a quick cheatsheet of flags.

docs/cli/model.md

@@ -39,7 +39,7 @@ To enable Gemini 3 Pro and Gemini 3 Flash (if available), enable
 
 You can also use the `--model` flag to specify a particular Gemini model on
 startup. For more details, refer to the
-[configuration documentation](../get-started/configuration.md).
+[configuration documentation](../reference/configuration.md).
 
 Changes to these settings will be applied to all subsequent interactions with
 Gemini CLI.

docs/cli/plan-mode.md

@@ -1,50 +1,62 @@
 # Plan Mode (experimental)
 
-Plan Mode is a safe, read-only mode for researching and designing complex
-changes. It prevents modifications while you research, design and plan an
-implementation strategy.
+Plan Mode is a read-only environment for architecting robust solutions before
+implementation. It allows you to:
 
-> **Note: Plan Mode is currently an experimental feature.**
->
-> Experimental features are subject to change. To use Plan Mode, enable it via
-> `/settings` (search for `Plan`) or add the following to your `settings.json`:
->
-> ```json
-> {
->   "experimental": {
->     "plan": true
->   }
-> }
-> ```
->
-> Your feedback is invaluable as we refine this feature. If you have ideas,
+- **Research:** Explore the project in a read-only state to prevent accidental
+  changes.
+- **Design:** Understand problems, evaluate trade-offs, and choose a solution.
+- **Plan:** Align on an execution strategy before any code is modified.
+
+> **Note:** This is a preview feature currently under active development. Your
+> feedback is invaluable as we refine this feature. If you have ideas,
 > suggestions, or encounter issues:
 >
-> - Use the `/bug` command within the CLI to file an issue.
 > - [Open an issue](https://github.com/google-gemini/gemini-cli/issues) on
 >   GitHub.
+> - Use the **/bug** command within Gemini CLI to file an issue.
 
-- [Starting in Plan Mode](#starting-in-plan-mode)
+- [Enabling Plan Mode](#enabling-plan-mode)
 - [How to use Plan Mode](#how-to-use-plan-mode)
   - [Entering Plan Mode](#entering-plan-mode)
-  - [The Planning Workflow](#the-planning-workflow)
+  - [Planning Workflow](#planning-workflow)
   - [Exiting Plan Mode](#exiting-plan-mode)
 - [Tool Restrictions](#tool-restrictions)
   - [Customizing Planning with Skills](#customizing-planning-with-skills)
   - [Customizing Policies](#customizing-policies)
+    - [Example: Allow git commands in Plan Mode](#example-allow-git-commands-in-plan-mode)
+    - [Example: Enable research subagents in Plan Mode](#example-enable-research-subagents-in-plan-mode)
+  - [Custom Plan Directory and Policies](#custom-plan-directory-and-policies)
+- [Automatic Model Routing](#automatic-model-routing)
 
-## Starting in Plan Mode
+## Enabling Plan Mode
 
-You can configure Gemini CLI to start directly in Plan Mode by default:
+To use Plan Mode, enable it via **/settings** (search for **Plan**) or add the
+following to your `settings.json`:
 
-1.  Type `/settings` in the CLI.
-2.  Search for `Default Approval Mode`.
-3.  Set the value to `Plan`.
+```json
+{
+  "experimental": {
+    "plan": true
+  }
+}
+```
 
-Other ways to start in Plan Mode:
+## How to use Plan Mode
 
-- **CLI Flag:** `gemini --approval-mode=plan`
-- **Manual Settings:** Manually update your `settings.json`:
+### Entering Plan Mode
+
+You can configure Gemini CLI to start in Plan Mode by default or enter it
+manually during a session.
+
+- **Configuration:** Configure Gemini CLI to start directly in Plan Mode by
+  default:
+  1.  Type `/settings` in the CLI.
+  2.  Search for **Default Approval Mode**.
+  3.  Set the value to **Plan**.
+
+  Alternatively, use the `gemini --approval-mode=plan` CLI flag or manually
+  update:
 
   ```json
   {
@@ -54,42 +66,44 @@ Other ways to start in Plan Mode:
   }
   ```
 
-## How to use Plan Mode
+- **Keyboard Shortcut:** Press `Shift+Tab` to cycle through approval modes
+  (`Default` -> `Auto-Edit` -> `Plan`).
 
-### Entering Plan Mode
+  > **Note:** Plan Mode is automatically removed from the rotation when Gemini
+  > CLI is actively processing or showing confirmation dialogs.
 
-You can enter Plan Mode in three ways:
+- **Command:** Type `/plan` in the input box.
 
-1.  **Keyboard Shortcut:** Press `Shift+Tab` to cycle through approval modes
-    (`Default` -> `Auto-Edit` -> `Plan`).
+- **Natural Language:** Ask Gemini CLI to "start a plan for...". Gemini CLI then
+  calls the [`enter_plan_mode`] tool to switch modes.
+  > **Note:** This tool is not available when Gemini CLI is in [YOLO mode].
 
-    > **Note:** Plan Mode is automatically removed from the rotation when the
-    > agent is actively processing or showing confirmation dialogs.
+### Planning Workflow
 
-2.  **Command:** Type `/plan` in the input box.
-3.  **Natural Language:** Ask the agent to "start a plan for...". The agent will
-    then call the [`enter_plan_mode`] tool to switch modes.
-
-### The Planning Workflow
-
-1.  **Requirements:** The agent clarifies goals using [`ask_user`].
-2.  **Exploration:** The agent uses read-only tools (like [`read_file`]) to map
-    the codebase and validate assumptions.
-3.  **Design:** The agent proposes alternative approaches with a recommended
-    solution for you to choose from.
-4.  **Planning:** A detailed plan is written to a temporary Markdown file.
-5.  **Review:** You review the plan.
-    - **Approve:** Exit Plan Mode and start implementation (switching to
-      Auto-Edit or Default approval mode).
+1.  **Explore & Analyze:** Analyze requirements and use read-only tools to map
+    the codebase and validate assumptions. For complex tasks, identify at least
+    two viable implementation approaches.
+2.  **Consult:** Present a summary of the identified approaches via [`ask_user`]
+    to obtain a selection. For simple or canonical tasks, this step may be
+    skipped.
+3.  **Draft:** Once an approach is selected, write a detailed implementation
+    plan to the plans directory.
+4.  **Review & Approval:** Use the [`exit_plan_mode`] tool to present the plan
+    and formally request approval.
+    - **Approve:** Exit Plan Mode and start implementation.
     - **Iterate:** Provide feedback to refine the plan.
 
+For more complex or specialized planning tasks, you can
+[customize the planning workflow with skills](#customizing-planning-with-skills).
+
 ### Exiting Plan Mode
 
-To exit Plan Mode:
+To exit Plan Mode, you can:
 
-1. **Keyboard Shortcut:** Press `Shift+Tab` to cycle to the desired mode.
-2. **Tool:** The agent calls the [`exit_plan_mode`] tool to present the
-   finalized plan for your approval.
+- **Keyboard Shortcut:** Press `Shift+Tab` to cycle to the desired mode.
+
+- **Tool:** Gemini CLI calls the [`exit_plan_mode`] tool to present the
+  finalized plan for your approval.
 
 ## Tool Restrictions
 
@@ -102,42 +116,57 @@ These are the only allowed tools:
 - **Interaction:** [`ask_user`]
 - **MCP Tools (Read):** Read-only [MCP tools] (e.g., `github_read_issue`,
   `postgres_read_schema`) are allowed.
-- **Planning (Write):** [`write_file`] and [`replace`] ONLY allowed for `.md`
-  files in the `~/.gemini/tmp/<project>/<session-id>/plans/` directory.
+- **Planning (Write):** [`write_file`] and [`replace`] only allowed for `.md`
+  files in the `~/.gemini/tmp/<project>/<session-id>/plans/` directory or your
+  [custom plans directory](#custom-plan-directory-and-policies).
 - **Skills:** [`activate_skill`] (allows loading specialized instructions and
   resources in a read-only manner)
 
 ### Customizing Planning with Skills
 
-You can leverage [Agent Skills](./skills.md) to customize how Gemini CLI
-approaches planning for specific types of tasks. When a skill is activated
-during Plan Mode, its specialized instructions and procedural workflows will
-guide the research and design phases.
+You can use [Agent Skills](./skills.md) to customize how Gemini CLI approaches
+planning for specific types of tasks. When a skill is activated during Plan
+Mode, its specialized instructions and procedural workflows will guide the
+research, design and planning phases.
 
 For example:
 
 - A **"Database Migration"** skill could ensure the plan includes data safety
   checks and rollback strategies.
-- A **"Security Audit"** skill could prompt the agent to look for specific
+- A **"Security Audit"** skill could prompt Gemini CLI to look for specific
   vulnerabilities during codebase exploration.
-- A **"Frontend Design"** skill could guide the agent to use specific UI
+- A **"Frontend Design"** skill could guide Gemini CLI to use specific UI
   components and accessibility standards in its proposal.
 
-To use a skill in Plan Mode, you can explicitly ask the agent to "use the
-[skill-name] skill to plan..." or the agent may autonomously activate it based
-on the task description.
+To use a skill in Plan Mode, you can explicitly ask Gemini CLI to "use the
+`<skill-name>` skill to plan..." or Gemini CLI may autonomously activate it
+based on the task description.
 
 ### Customizing Policies
 
-Plan Mode is designed to be read-only by default to ensure safety during the
-research phase. However, you may occasionally need to allow specific tools to
-assist in your planning.
+Plan Mode's default tool restrictions are managed by the [policy engine] and
+defined in the built-in [`plan.toml`] file. The built-in policy (Tier 1)
+enforces the read-only state, but you can customize these rules by creating your
+own policies in your `~/.gemini/policies/` directory (Tier 2).
 
-Because user policies (Tier 2) have a higher base priority than built-in
-policies (Tier 1), you can override Plan Mode's default restrictions by creating
-a rule in your `~/.gemini/policies/` directory.
+#### Example: Automatically approve read-only MCP tools
 
-#### Example: Allow `git status` and `git diff` in Plan Mode
+By default, read-only MCP tools require user confirmation in Plan Mode. You can
+use `toolAnnotations` and the `mcpName` wildcard to customize this behavior for
+your specific environment.
+
+`~/.gemini/policies/mcp-read-only.toml`
+
+```toml
+[[rule]]
+mcpName = "*"
+toolAnnotations = { readOnlyHint = true }
+decision = "allow"
+priority = 100
+modes = ["plan"]
+```
+
+#### Example: Allow git commands in Plan Mode
 
 This rule allows you to check the repository status and see changes while in
 Plan Mode.
@@ -153,10 +182,10 @@ priority = 100
 modes = ["plan"]
 ```
 
-#### Example: Enable research sub-agents in Plan Mode
+#### Example: Enable research subagents in Plan Mode
 
-You can enable [experimental research sub-agents] like `codebase_investigator`
-to help gather architecture details during the planning phase.
+You can enable experimental research [subagents] like `codebase_investigator` to
+help gather architecture details during the planning phase.
 
 `~/.gemini/policies/research-subagents.toml`
 
@@ -168,11 +197,77 @@ priority = 100
 modes = ["plan"]
 ```
 
-Tell the agent it can use these tools in your prompt, for example: _"You can
+Tell Gemini CLI it can use these tools in your prompt, for example: _"You can
 check ongoing changes in git."_
 
-For more information on how the policy engine works, see the [Policy Engine
-Guide].
+For more information on how the policy engine works, see the [policy engine]
+docs.
+
+### Custom Plan Directory and Policies
+
+By default, planning artifacts are stored in a managed temporary directory
+outside your project: `~/.gemini/tmp/<project>/<session-id>/plans/`.
+
+You can configure a custom directory for plans in your `settings.json`. For
+example, to store plans in a `.gemini/plans` directory within your project:
+
+```json
+{
+  "general": {
+    "plan": {
+      "directory": ".gemini/plans"
+    }
+  }
+}
+```
+
+To maintain the safety of Plan Mode, user-configured paths for the plans
+directory are restricted to the project root. This ensures that custom planning
+locations defined within a project's workspace cannot be used to escape and
+overwrite sensitive files elsewhere. Any user-configured directory must reside
+within the project boundary.
+
+Using a custom directory requires updating your [policy engine] configurations
+to allow `write_file` and `replace` in that specific location. For example, to
+allow writing to the `.gemini/plans` directory within your project, create a
+policy file at `~/.gemini/policies/plan-custom-directory.toml`:
+
+```toml
+[[rule]]
+toolName = ["write_file", "replace"]
+decision = "allow"
+priority = 100
+modes = ["plan"]
+# Adjust the pattern to match your custom directory.
+# This example matches any .md file in a .gemini/plans directory within the project.
+argsPattern = "\"file_path\":\"[^\"]+[\\\\/]+\\.gemini[\\\\/]+plans[\\\\/]+[\\w-]+\\.md\""
+```
+
+## Automatic Model Routing
+
+When using an [**auto model**], Gemini CLI automatically optimizes [**model
+routing**] based on the current phase of your task:
+
+1.  **Planning Phase:** While in Plan Mode, the CLI routes requests to a
+    high-reasoning **Pro** model to ensure robust architectural decisions and
+    high-quality plans.
+2.  **Implementation Phase:** Once a plan is approved and you exit Plan Mode,
+    the CLI detects the existence of the approved plan and automatically
+    switches to a high-speed **Flash** model. This provides a faster, more
+    responsive experience during the implementation of the plan.
+
+This behavior is enabled by default to provide the best balance of quality and
+performance. You can disable this automatic switching in your settings:
+
+```json
+{
+  "general": {
+    "plan": {
+      "modelRouting": false
+    }
+  }
+}
+```
 
 [`list_directory`]: /docs/tools/file-system.md#1-list_directory-readfolder
 [`read_file`]: /docs/tools/file-system.md#2-read_file-readfile
@@ -183,8 +278,13 @@ Guide].
 [`replace`]: /docs/tools/file-system.md#6-replace-edit
 [MCP tools]: /docs/tools/mcp-server.md
 [`activate_skill`]: /docs/cli/skills.md
-[experimental research sub-agents]: /docs/core/subagents.md
-[Policy Engine Guide]: /docs/core/policy-engine.md
+[subagents]: /docs/core/subagents.md
+[policy engine]: /docs/reference/policy-engine.md
 [`enter_plan_mode`]: /docs/tools/planning.md#1-enter_plan_mode-enterplanmode
 [`exit_plan_mode`]: /docs/tools/planning.md#2-exit_plan_mode-exitplanmode
 [`ask_user`]: /docs/tools/ask-user.md
+[YOLO mode]: /docs/reference/configuration.md#command-line-arguments
+[`plan.toml`]:
+  https://github.com/google-gemini/gemini-cli/blob/main/packages/core/src/policy/policies/plan.toml
+[auto model]: /docs/reference/configuration.md#model-settings
+[model routing]: /docs/cli/telemetry.md#model-routing

docs/cli/sandbox.md

@@ -167,6 +167,6 @@ gemini -s -p "run shell command: mount | grep workspace"
 
 ## Related documentation
 
-- [Configuration](../get-started/configuration.md): Full configuration options.
-- [Commands](./commands.md): Available commands.
-- [Troubleshooting](../troubleshooting.md): General troubleshooting.
+- [Configuration](../reference/configuration.md): Full configuration options.
+- [Commands](../reference/commands.md): Available commands.
+- [Troubleshooting](../resources/troubleshooting.md): General troubleshooting.

docs/cli/settings.md

@@ -22,16 +22,18 @@ they appear in the UI.
 
 ### General
 
-| UI Label                 | Setting                            | Description                                                                                                                                                                    | Default     |
-| ------------------------ | ---------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | ----------- |
-| Vim Mode                 | `general.vimMode`                  | Enable Vim keybindings                                                                                                                                                         | `false`     |
-| Default Approval Mode    | `general.defaultApprovalMode`      | The default approval mode for tool execution. 'default' prompts for approval, 'auto_edit' auto-approves edit tools, and 'plan' is read-only mode. 'yolo' is not supported yet. | `"default"` |
-| Enable Auto Update       | `general.enableAutoUpdate`         | Enable automatic updates.                                                                                                                                                      | `true`      |
-| Enable Notifications     | `general.enableNotifications`      | Enable run-event notifications for action-required prompts and session completion. Currently macOS only.                                                                       | `false`     |
-| Enable Prompt Completion | `general.enablePromptCompletion`   | Enable AI-powered prompt completion suggestions while typing.                                                                                                                  | `false`     |
-| Debug Keystroke Logging  | `general.debugKeystrokeLogging`    | Enable debug logging of keystrokes to the console.                                                                                                                             | `false`     |
-| Enable Session Cleanup   | `general.sessionRetention.enabled` | Enable automatic session cleanup                                                                                                                                               | `false`     |
-| Keep chat history        | `general.sessionRetention.maxAge`  | Automatically delete chats older than this time period (e.g., "30d", "7d", "24h", "1w")                                                                                        | `undefined` |
+| UI Label                | Setting                            | Description                                                                                                                                                                    | Default     |
+| ----------------------- | ---------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | ----------- |
+| Vim Mode                | `general.vimMode`                  | Enable Vim keybindings                                                                                                                                                         | `false`     |
+| Default Approval Mode   | `general.defaultApprovalMode`      | The default approval mode for tool execution. 'default' prompts for approval, 'auto_edit' auto-approves edit tools, and 'plan' is read-only mode. 'yolo' is not supported yet. | `"default"` |
+| Enable Auto Update      | `general.enableAutoUpdate`         | Enable automatic updates.                                                                                                                                                      | `true`      |
+| Enable Notifications    | `general.enableNotifications`      | Enable run-event notifications for action-required prompts and session completion. Currently macOS only.                                                                       | `false`     |
+| Plan Directory          | `general.plan.directory`           | The directory where planning artifacts are stored. If not specified, defaults to the system temporary directory.                                                               | `undefined` |
+| Plan Model Routing      | `general.plan.modelRouting`        | Automatically switch between Pro and Flash models based on Plan Mode status. Uses Pro for the planning phase and Flash for the implementation phase.                           | `true`      |
+| Max Chat Model Attempts | `general.maxAttempts`              | Maximum number of attempts for requests to the main chat model. Cannot exceed 10.                                                                                              | `10`        |
+| Debug Keystroke Logging | `general.debugKeystrokeLogging`    | Enable debug logging of keystrokes to the console.                                                                                                                             | `false`     |
+| Enable Session Cleanup  | `general.sessionRetention.enabled` | Enable automatic session cleanup                                                                                                                                               | `false`     |
+| Keep chat history       | `general.sessionRetention.maxAge`  | Automatically delete chats older than this time period (e.g., "30d", "7d", "24h", "1w")                                                                                        | `undefined` |
 
 ### Output
 
@@ -41,35 +43,36 @@ they appear in the UI.
 
 ### UI
 
-| UI Label                             | Setting                                 | Description                                                                                                                                                       | Default |
-| ------------------------------------ | --------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------- | ------- |
-| Auto Theme Switching                 | `ui.autoThemeSwitching`                 | Automatically switch between default light and dark themes based on terminal background color.                                                                    | `true`  |
-| Terminal Background Polling Interval | `ui.terminalBackgroundPollingInterval`  | Interval in seconds to poll the terminal background color.                                                                                                        | `60`    |
-| Hide Window Title                    | `ui.hideWindowTitle`                    | Hide the window title bar                                                                                                                                         | `false` |
-| Inline Thinking                      | `ui.inlineThinkingMode`                 | Display model thinking inline: off or full.                                                                                                                       | `"off"` |
-| Show Thoughts in Title               | `ui.showStatusInTitle`                  | Show Gemini CLI model thoughts in the terminal window title during the working phase                                                                              | `false` |
-| Dynamic Window Title                 | `ui.dynamicWindowTitle`                 | Update the terminal window title with current status icons (Ready: ◇, Action Required: ✋, Working: ✦)                                                            | `true`  |
-| Show Home Directory Warning          | `ui.showHomeDirectoryWarning`           | Show a warning when running Gemini CLI in the home directory.                                                                                                     | `true`  |
-| Hide Tips                            | `ui.hideTips`                           | Hide helpful tips in the UI                                                                                                                                       | `false` |
-| Show Shortcuts Hint                  | `ui.showShortcutsHint`                  | Show the "? for shortcuts" hint above the input.                                                                                                                  | `true`  |
-| Hide Banner                          | `ui.hideBanner`                         | Hide the application banner                                                                                                                                       | `false` |
-| Hide Context Summary                 | `ui.hideContextSummary`                 | Hide the context summary (GEMINI.md, MCP servers) above the input.                                                                                                | `false` |
-| Hide CWD                             | `ui.footer.hideCWD`                     | Hide the current working directory path in the footer.                                                                                                            | `false` |
-| Hide Sandbox Status                  | `ui.footer.hideSandboxStatus`           | Hide the sandbox status indicator in the footer.                                                                                                                  | `false` |
-| Hide Model Info                      | `ui.footer.hideModelInfo`               | Hide the model name and context usage in the footer.                                                                                                              | `false` |
-| Hide Context Window Percentage       | `ui.footer.hideContextPercentage`       | Hides the context window remaining percentage.                                                                                                                    | `true`  |
-| Hide Footer                          | `ui.hideFooter`                         | Hide the footer from the UI                                                                                                                                       | `false` |
-| Show Memory Usage                    | `ui.showMemoryUsage`                    | Display memory usage information in the UI                                                                                                                        | `false` |
-| Show Line Numbers                    | `ui.showLineNumbers`                    | Show line numbers in the chat.                                                                                                                                    | `true`  |
-| Show Citations                       | `ui.showCitations`                      | Show citations for generated text in the chat.                                                                                                                    | `false` |
-| Show Model Info In Chat              | `ui.showModelInfoInChat`                | Show the model name in the chat for each model turn.                                                                                                              | `false` |
-| Show User Identity                   | `ui.showUserIdentity`                   | Show the logged-in user's identity (e.g. email) in the UI.                                                                                                        | `true`  |
-| Use Alternate Screen Buffer          | `ui.useAlternateBuffer`                 | Use an alternate screen buffer for the UI, preserving shell history.                                                                                              | `false` |
-| Use Background Color                 | `ui.useBackgroundColor`                 | Whether to use background colors in the UI.                                                                                                                       | `true`  |
-| Incremental Rendering                | `ui.incrementalRendering`               | Enable incremental rendering for the UI. This option will reduce flickering but may cause rendering artifacts. Only supported when useAlternateBuffer is enabled. | `true`  |
-| Show Spinner                         | `ui.showSpinner`                        | Show the spinner during operations.                                                                                                                               | `true`  |
-| Enable Loading Phrases               | `ui.accessibility.enableLoadingPhrases` | Enable loading phrases during operations.                                                                                                                         | `true`  |
-| Screen Reader Mode                   | `ui.accessibility.screenReader`         | Render output in plain-text to be more screen reader accessible                                                                                                   | `false` |
+| UI Label                             | Setting                                | Description                                                                                                                                                       | Default  |
+| ------------------------------------ | -------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------- | -------- |
+| Auto Theme Switching                 | `ui.autoThemeSwitching`                | Automatically switch between default light and dark themes based on terminal background color.                                                                    | `true`   |
+| Terminal Background Polling Interval | `ui.terminalBackgroundPollingInterval` | Interval in seconds to poll the terminal background color.                                                                                                        | `60`     |
+| Hide Window Title                    | `ui.hideWindowTitle`                   | Hide the window title bar                                                                                                                                         | `false`  |
+| Inline Thinking                      | `ui.inlineThinkingMode`                | Display model thinking inline: off or full.                                                                                                                       | `"off"`  |
+| Show Thoughts in Title               | `ui.showStatusInTitle`                 | Show Gemini CLI model thoughts in the terminal window title during the working phase                                                                              | `false`  |
+| Dynamic Window Title                 | `ui.dynamicWindowTitle`                | Update the terminal window title with current status icons (Ready: ◇, Action Required: ✋, Working: ✦)                                                            | `true`   |
+| Show Home Directory Warning          | `ui.showHomeDirectoryWarning`          | Show a warning when running Gemini CLI in the home directory.                                                                                                     | `true`   |
+| Show Compatibility Warnings          | `ui.showCompatibilityWarnings`         | Show warnings about terminal or OS compatibility issues.                                                                                                          | `true`   |
+| Hide Tips                            | `ui.hideTips`                          | Hide helpful tips in the UI                                                                                                                                       | `false`  |
+| Show Shortcuts Hint                  | `ui.showShortcutsHint`                 | Show the "? for shortcuts" hint above the input.                                                                                                                  | `true`   |
+| Hide Banner                          | `ui.hideBanner`                        | Hide the application banner                                                                                                                                       | `false`  |
+| Hide Context Summary                 | `ui.hideContextSummary`                | Hide the context summary (GEMINI.md, MCP servers) above the input.                                                                                                | `false`  |
+| Hide CWD                             | `ui.footer.hideCWD`                    | Hide the current working directory path in the footer.                                                                                                            | `false`  |
+| Hide Sandbox Status                  | `ui.footer.hideSandboxStatus`          | Hide the sandbox status indicator in the footer.                                                                                                                  | `false`  |
+| Hide Model Info                      | `ui.footer.hideModelInfo`              | Hide the model name and context usage in the footer.                                                                                                              | `false`  |
+| Hide Context Window Percentage       | `ui.footer.hideContextPercentage`      | Hides the context window remaining percentage.                                                                                                                    | `true`   |
+| Hide Footer                          | `ui.hideFooter`                        | Hide the footer from the UI                                                                                                                                       | `false`  |
+| Show Memory Usage                    | `ui.showMemoryUsage`                   | Display memory usage information in the UI                                                                                                                        | `false`  |
+| Show Line Numbers                    | `ui.showLineNumbers`                   | Show line numbers in the chat.                                                                                                                                    | `true`   |
+| Show Citations                       | `ui.showCitations`                     | Show citations for generated text in the chat.                                                                                                                    | `false`  |
+| Show Model Info In Chat              | `ui.showModelInfoInChat`               | Show the model name in the chat for each model turn.                                                                                                              | `false`  |
+| Show User Identity                   | `ui.showUserIdentity`                  | Show the logged-in user's identity (e.g. email) in the UI.                                                                                                        | `true`   |
+| Use Alternate Screen Buffer          | `ui.useAlternateBuffer`                | Use an alternate screen buffer for the UI, preserving shell history.                                                                                              | `false`  |
+| Use Background Color                 | `ui.useBackgroundColor`                | Whether to use background colors in the UI.                                                                                                                       | `true`   |
+| Incremental Rendering                | `ui.incrementalRendering`              | Enable incremental rendering for the UI. This option will reduce flickering but may cause rendering artifacts. Only supported when useAlternateBuffer is enabled. | `true`   |
+| Show Spinner                         | `ui.showSpinner`                       | Show the spinner during operations.                                                                                                                               | `true`   |
+| Loading Phrases                      | `ui.loadingPhrases`                    | What to show while the model is working: tips, witty comments, both, or nothing.                                                                                  | `"tips"` |
+| Screen Reader Mode                   | `ui.accessibility.screenReader`        | Render output in plain-text to be more screen reader accessible                                                                                                   | `false`  |
 
 ### IDE
 
@@ -110,14 +113,15 @@ they appear in the UI.
 
 ### Security
 
-| UI Label                              | Setting                                         | Description                                                                                                                                                             | Default |
-| ------------------------------------- | ----------------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- | ------- |
-| Disable YOLO Mode                     | `security.disableYoloMode`                      | Disable YOLO mode, even if enabled by a flag.                                                                                                                           | `false` |
-| Allow Permanent Tool Approval         | `security.enablePermanentToolApproval`          | Enable the "Allow for all future sessions" option in tool confirmation dialogs.                                                                                         | `false` |
-| Blocks extensions from Git            | `security.blockGitExtensions`                   | Blocks installing and loading extensions from Git.                                                                                                                      | `false` |
-| Extension Source Regex Allowlist      | `security.allowedExtensions`                    | List of Regex patterns for allowed extensions. If nonempty, only extensions that match the patterns in this list are allowed. Overrides the blockGitExtensions setting. | `[]`    |
-| Folder Trust                          | `security.folderTrust.enabled`                  | Setting to track whether Folder trust is enabled.                                                                                                                       | `true`  |
-| Enable Environment Variable Redaction | `security.environmentVariableRedaction.enabled` | Enable redaction of environment variables that may contain secrets.                                                                                                     | `false` |
+| UI Label                              | Setting                                         | Description                                                                                                                                                                                                                          | Default |
+| ------------------------------------- | ----------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | ------- |
+| Disable YOLO Mode                     | `security.disableYoloMode`                      | Disable YOLO mode, even if enabled by a flag.                                                                                                                                                                                        | `false` |
+| Allow Permanent Tool Approval         | `security.enablePermanentToolApproval`          | Enable the "Allow for all future sessions" option in tool confirmation dialogs.                                                                                                                                                      | `false` |
+| Blocks extensions from Git            | `security.blockGitExtensions`                   | Blocks installing and loading extensions from Git.                                                                                                                                                                                   | `false` |
+| Extension Source Regex Allowlist      | `security.allowedExtensions`                    | List of Regex patterns for allowed extensions. If nonempty, only extensions that match the patterns in this list are allowed. Overrides the blockGitExtensions setting.                                                              | `[]`    |
+| Folder Trust                          | `security.folderTrust.enabled`                  | Setting to track whether Folder trust is enabled.                                                                                                                                                                                    | `true`  |
+| Enable Environment Variable Redaction | `security.environmentVariableRedaction.enabled` | Enable redaction of environment variables that may contain secrets.                                                                                                                                                                  | `false` |
+| Enable Context-Aware Security         | `security.enableConseca`                        | Enable the context-aware security checker. This feature uses an LLM to dynamically generate and enforce security policies for tool use based on your prompt, providing an additional layer of protection against unintended actions. | `false` |
 
 ### Advanced
 
@@ -127,12 +131,14 @@ they appear in the UI.
 
 ### Experimental
 
-| UI Label                   | Setting                                  | Description                                                                         | Default |
-| -------------------------- | ---------------------------------------- | ----------------------------------------------------------------------------------- | ------- |
-| Enable Tool Output Masking | `experimental.toolOutputMasking.enabled` | Enables tool output masking to save tokens.                                         | `true`  |
-| Use OSC 52 Paste           | `experimental.useOSC52Paste`             | Use OSC 52 sequence for pasting instead of clipboardy (useful for remote sessions). | `false` |
-| Plan                       | `experimental.plan`                      | Enable planning features (Plan Mode and tools).                                     | `false` |
-| Model Steering             | `experimental.modelSteering`             | Enable model steering (user hints) to guide the model during tool execution.        | `false` |
+| UI Label                   | Setting                                  | Description                                                                                                                                               | Default |
+| -------------------------- | ---------------------------------------- | --------------------------------------------------------------------------------------------------------------------------------------------------------- | ------- |
+| Enable Tool Output Masking | `experimental.toolOutputMasking.enabled` | Enables tool output masking to save tokens.                                                                                                               | `true`  |
+| Use OSC 52 Paste           | `experimental.useOSC52Paste`             | Use OSC 52 for pasting. This may be more robust than the default system when using remote terminal sessions (if your terminal is configured to allow it). | `false` |
+| Use OSC 52 Copy            | `experimental.useOSC52Copy`              | Use OSC 52 for copying. This may be more robust than the default system when using remote terminal sessions (if your terminal is configured to allow it). | `false` |
+| Plan                       | `experimental.plan`                      | Enable planning features (Plan Mode and tools).                                                                                                           | `false` |
+| Model Steering             | `experimental.modelSteering`             | Enable model steering (user hints) to guide the model during tool execution.                                                                              | `false` |
+| Direct Web Fetch           | `experimental.directWebFetch`            | Enable web fetch behavior that bypasses LLM summarization.                                                                                                | `false` |
 
 ### Skills
 

docs/cli/telemetry.md

@@ -93,7 +93,7 @@ Environment variables can be used to override the settings in the file.
 `true` or `1` will enable the feature. Any other value will disable it.
 
 For detailed information about all configuration options, see the
-[Configuration guide](../get-started/configuration.md).
+[Configuration guide](../reference/configuration.md).
 
 ## Google Cloud telemetry
 
@@ -487,6 +487,7 @@ Captures Gemini API requests, responses, and errors.
     - `reasoning` (string, optional)
     - `failed` (boolean)
     - `error_message` (string, optional)
+    - `approval_mode` (string)
 
 #### Chat and streaming
 
@@ -711,12 +712,14 @@ Routing latency/failures and slash-command selections.
   - **Attributes**:
     - `routing.decision_model` (string)
     - `routing.decision_source` (string)
+    - `routing.approval_mode` (string)
 
 - `gemini_cli.model_routing.failure.count` (Counter, Int): Counts model routing
   failures.
   - **Attributes**:
     - `routing.decision_source` (string)
     - `routing.error_message` (string)
+    - `routing.approval_mode` (string)
 
 ##### Agent runs
 

docs/cli/themes.md

@@ -41,8 +41,8 @@ can change the theme using the `/theme` command.
 ### Theme persistence
 
 Selected themes are saved in Gemini CLI's
-[configuration](../get-started/configuration.md) so your preference is
-remembered across sessions.
+[configuration](../reference/configuration.md) so your preference is remembered
+across sessions.
 
 ---
 
@@ -194,7 +194,7 @@ untrusted sources.
 - Or, set it as the default by adding `"theme": "MyCustomTheme"` to the `ui`
   object in your `settings.json`.
 - Custom themes can be set at the user, project, or system level, and follow the
-  same [configuration precedence](../get-started/configuration.md) as other
+  same [configuration precedence](../reference/configuration.md) as other
   settings.
 
 ### Themes from extensions

docs/cli/trusted-folders.md

@@ -38,6 +38,37 @@ folder, a dialog will automatically appear, prompting you to make a choice:
 Your choice is saved in a central file (`~/.gemini/trustedFolders.json`), so you
 will only be asked once per folder.
 
+## Understanding folder contents: The discovery phase
+
+Before you make a choice, the Gemini CLI performs a **discovery phase** to scan
+the folder for potential configurations. This information is displayed in the
+trust dialog to help you make an informed decision.
+
+The discovery UI lists the following categories of items found in the project:
+
+- **Commands**: Custom `.toml` command definitions that add new functionality.
+- **MCP Servers**: Configured Model Context Protocol servers that the CLI will
+  attempt to connect to.
+- **Hooks**: System or custom hooks that can intercept and modify CLI behavior.
+- **Skills**: Local agent skills that provide specialized capabilities.
+- **Setting overrides**: Any project-specific configurations that override your
+  global user settings.
+
+### Security warnings and errors
+
+The trust dialog also highlights critical information that requires your
+attention:
+
+- **Security Warnings**: The CLI will explicitly flag potentially dangerous
+  settings, such as auto-approving certain tools or disabling the security
+  sandbox.
+- **Discovery Errors**: If the CLI encounters issues while scanning the folder
+  (e.g., a malformed `settings.json` file), these errors will be displayed
+  prominently.
+
+By reviewing these details, you can ensure that you only grant trust to projects
+that you know are safe.
+
 ## Why trust matters: The impact of an untrusted workspace
 
 When a folder is **untrusted**, the Gemini CLI runs in a restricted "safe mode"

docs/cli/tutorials/memory-management.md

@@ -121,6 +121,6 @@ immediately. Force a reload with:
 
 - Learn about [Session management](session-management.md) to see how short-term
   history works.
-- Explore the [Command reference](../../cli/commands.md) for more `/memory`
-  options.
+- Explore the [Command reference](../../reference/commands.md) for more
+  `/memory` options.
 - Read the technical spec for [Project context](../../cli/gemini-md.md).

docs/cli/tutorials/session-management.md

@@ -101,5 +101,5 @@ This creates a new branch of history without losing your original work.
 - Learn about [Checkpointing](../../cli/checkpointing.md) to understand the
   underlying safety mechanism.
 - Explore [Task planning](task-planning.md) to keep complex sessions organized.
-- See the [Command reference](../../cli/commands.md) for all `/chat` and
+- See the [Command reference](../../reference/commands.md) for all `/chat` and
   `/resume` options.

docs/core/concepts.md

@@ -1,137 +0,0 @@
-# Core concepts
-
-This guide explains the fundamental concepts and terminology used throughout the
-Gemini CLI ecosystem. Understanding these terms will help you make the most of
-the tool's capabilities.
-
-## Approval mode
-
-**Approval mode** determines the level of autonomy you grant to the agent when
-executing tools.
-
-- **Default:** The agent asks for confirmation before performing any potentially
-  impactful action (like writing files or running shell commands).
-- **Auto-edit:** File modifications are applied automatically, but shell
-  commands still require confirmation.
-- **YOLO (You Only Look Once):** The agent runs all tools without asking for
-  permission. High risk, high speed.
-
-## Checkpointing
-
-**Checkpointing** is a safety feature that automatically snapshots your
-project's file state before the agent performs any destructive action (like
-writing a file).
-
-- **Snapshots:** Stored in a hidden Git repository (separate from your project's
-  Git history).
-- **Restore:** Allows you to instantly revert changes if the agent makes a
-  mistake, using the `/restore` command.
-
-## Context
-
-**Context** refers to the information the agent has about your current task and
-environment. Gemini CLI provides context through several mechanisms:
-
-- **Conversation history:** The chat log of the current session.
-- **Project context (`GEMINI.md`):** Persistent instructions and rules defined
-  in your project's root or subdirectories.
-- **File content:** Files you explicitly reference (e.g., `@src/app.ts`) or that
-  the agent reads using tools.
-- **Environment:** Information about your operating system, shell, and working
-  directory.
-
-Effective context management is key to getting accurate and relevant responses.
-
-## Extension
-
-An **Extension** is a pluggable package that adds new capabilities to Gemini
-CLI. Extensions can bundle:
-
-- **Skills:** Specialized procedural knowledge.
-- **MCP Servers:** Connections to external tools and data.
-- **Commands:** Custom slash commands.
-
-## Headless mode
-
-**Headless mode** refers to running Gemini CLI without the interactive terminal
-UI (TUI). This is used for scripting, automation, and piping data into or out of
-the agent.
-
-- **Interactive:** `gemini` (starts the REPL).
-- **Headless:** `gemini "Fix this file"` (runs once and exits).
-
-## Hook
-
-A **Hook** is a script or function that intercepts specific lifecycle events in
-the CLI.
-
-- **Use cases:** Logging tool usage, validating user input, or modifying the
-  agent's system prompt dynamically.
-- **Lifecycle:** Hooks can run before or after the agent starts, before tools
-  are executed, or after the session ends.
-
-## Model Context Protocol (MCP)
-
-The **Model Context Protocol (MCP)** is an open standard that allows Gemini CLI
-to connect to external data sources and tools.
-
-- **MCP Server:** A lightweight application that exposes resources (data) and
-  tools (functions) to the CLI.
-- **Use case:** Connecting Gemini to a PostgreSQL database, a GitHub repository,
-  or a Slack workspace without building custom integration logic into the CLI
-  core.
-
-## Policy engine
-
-The **Policy Engine** is the security subsystem that enforces rules on tool
-execution. It evaluates every tool call against your configuration (e.g.,
-[Trusted folders](#trusted-folders), allowed commands) to decide whether to:
-
-- Allow the action immediately.
-- Require user confirmation.
-- Block the action entirely.
-
-## Sandboxing
-
-**Sandboxing** is an optional security mode that isolates the agent's execution
-environment. When enabled, the agent runs inside a secure container (e.g.,
-Docker), preventing it from accessing sensitive files or system resources
-outside of the designated workspace.
-
-## Session
-
-A **Session** is a single continuous interaction thread with the agent.
-
-- **State:** Sessions maintain conversation history and short-term memory.
-- **Persistence:** Sessions are automatically saved, allowing you to pause,
-  resume, or rewind them later.
-
-## Skill
-
-A **Skill** (or **Agent Skill**) is a package of specialized expertise that the
-agent can load on demand. Unlike general context, a skill provides specific
-procedural knowledge for a distinct task.
-
-- **Example:** A "Code Reviewer" skill might contain a checklist of security
-  vulnerabilities to look for and a specific format for reporting findings.
-- **Activation:** Skills are typically activated dynamically when the agent
-  recognizes a matching request.
-
-## Tool
-
-A **Tool** is a specific function or capability that the agent can execute.
-Tools allow the AI to interact with the outside world.
-
-- **Built-in tools:** Core capabilities like `read_file`, `run_shell_command`,
-  and `google_web_search`.
-- **MCP tools:** External tools provided by
-  [MCP servers](#model-context-protocol-mcp).
-
-When the agent uses a tool, it pauses generation, executes the code, and feeds
-the output back into its context window.
-
-## Trusted folders
-
-**Trusted folders** are specific directories you have explicitly authorized the
-agent to access without repeated confirmation prompts. This is a key component
-of the [Policy engine](#policy-engine) to balance security and usability.

docs/core/index.md

@@ -9,11 +9,11 @@ requests sent from `packages/cli`. For a general overview of Gemini CLI, see the
 
 - **[Sub-agents (experimental)](./subagents.md):** Learn how to create and use
   specialized sub-agents for complex tasks.
-- **[Core tools API](./tools-api.md):** Information on how tools are defined,
-  registered, and used by the core.
-- **[Memory Import Processor](./memport.md):** Documentation for the modular
-  GEMINI.md import feature using @file.md syntax.
-- **[Policy Engine](./policy-engine.md):** Use the Policy Engine for
+- **[Core tools API](../reference/tools-api.md):** Information on how tools are
+  defined, registered, and used by the core.
+- **[Memory Import Processor](../reference/memport.md):** Documentation for the
+  modular GEMINI.md import feature using @file.md syntax.
+- **[Policy Engine](../reference/policy-engine.md):** Use the Policy Engine for
   fine-grained control over tool execution.
 
 ## Role of the core
@@ -92,8 +92,8 @@ This allows you to have global, project-level, and component-level context
 files, which are all combined to provide the model with the most relevant
 information.
 
-You can use the [`/memory` command](../cli/commands.md) to `show`, `add`, and
-`refresh` the content of loaded `GEMINI.md` files.
+You can use the [`/memory` command](../reference/commands.md) to `show`, `add`,
+and `refresh` the content of loaded `GEMINI.md` files.
 
 ## Citations
 

docs/core/subagents.md

@@ -1,13 +1,13 @@
-# Sub-agents (experimental)
+# Subagents (experimental)
 
-Sub-agents are specialized agents that operate within your main Gemini CLI
+Subagents are specialized agents that operate within your main Gemini CLI
 session. They are designed to handle specific, complex tasks—like deep codebase
 analysis, documentation lookup, or domain-specific reasoning—without cluttering
 the main agent's context or toolset.
 
-> **Note: Sub-agents are currently an experimental feature.**
+> **Note: Subagents are currently an experimental feature.**
 >
-> To use custom sub-agents, you must explicitly enable them in your
+> To use custom subagents, you must explicitly enable them in your
 > `settings.json`:
 >
 > ```json
@@ -16,31 +16,31 @@ the main agent's context or toolset.
 > }
 > ```
 >
-> **Warning:** Sub-agents currently operate in
-> ["YOLO mode"](../get-started/configuration.md#command-line-arguments), meaning
+> **Warning:** Subagents currently operate in
+> ["YOLO mode"](../reference/configuration.md#command-line-arguments), meaning
 > they may execute tools without individual user confirmation for each step.
 > Proceed with caution when defining agents with powerful tools like
 > `run_shell_command` or `write_file`.
 
-## What are sub-agents?
+## What are subagents?
 
-Sub-agents are "specialists" that the main Gemini agent can hire for a specific
+Subagents are "specialists" that the main Gemini agent can hire for a specific
 job.
 
-- **Focused context:** Each sub-agent has its own system prompt and persona.
-- **Specialized tools:** Sub-agents can have a restricted or specialized set of
+- **Focused context:** Each subagent has its own system prompt and persona.
+- **Specialized tools:** Subagents can have a restricted or specialized set of
   tools.
-- **Independent context window:** Interactions with a sub-agent happen in a
+- **Independent context window:** Interactions with a subagent happen in a
   separate context loop, which saves tokens in your main conversation history.
 
-Sub-agents are exposed to the main agent as a tool of the same name. When the
-main agent calls the tool, it delegates the task to the sub-agent. Once the
-sub-agent completes its task, it reports back to the main agent with its
+Subagents are exposed to the main agent as a tool of the same name. When the
+main agent calls the tool, it delegates the task to the subagent. Once the
+subagent completes its task, it reports back to the main agent with its
 findings.
 
-## Built-in sub-agents
+## Built-in subagents
 
-Gemini CLI comes with the following built-in sub-agents:
+Gemini CLI comes with the following built-in subagents:
 
 ### Codebase Investigator
 
@@ -75,15 +75,131 @@ Gemini CLI comes with the following built-in sub-agents:
 ### Generalist Agent
 
 - **Name:** `generalist_agent`
-- **Purpose:** Route tasks to the appropriate specialized sub-agent.
+- **Purpose:** Route tasks to the appropriate specialized subagent.
 - **When to use:** Implicitly used by the main agent for routing. Not directly
   invoked by the user.
 - **Configuration:** Enabled by default. No specific configuration options.
 
-## Creating custom sub-agents
+### Browser Agent (experimental)
 
-You can create your own sub-agents to automate specific workflows or enforce
-specific personas. To use custom sub-agents, you must enable them in your
+- **Name:** `browser_agent`
+- **Purpose:** Automate web browser tasks — navigating websites, filling forms,
+  clicking buttons, and extracting information from web pages — using the
+  accessibility tree.
+- **When to use:** "Go to example.com and fill out the contact form," "Extract
+  the pricing table from this page," "Click the login button and enter my
+  credentials."
+
+> **Note:** This is a preview feature currently under active development.
+
+#### Prerequisites
+
+The browser agent requires:
+
+- **Chrome** version 144 or later (any recent stable release will work).
+- **Node.js** with `npx` available (used to launch the
+  [`chrome-devtools-mcp`](https://www.npmjs.com/package/chrome-devtools-mcp)
+  server).
+
+#### Enabling the browser agent
+
+The browser agent is disabled by default. Enable it in your `settings.json`:
+
+```json
+{
+  "agents": {
+    "overrides": {
+      "browser_agent": {
+        "enabled": true
+      }
+    }
+  }
+}
+```
+
+#### Session modes
+
+The `sessionMode` setting controls how Chrome is launched and managed. Set it
+under `agents.browser`:
+
+```json
+{
+  "agents": {
+    "overrides": {
+      "browser_agent": {
+        "enabled": true
+      }
+    },
+    "browser": {
+      "sessionMode": "persistent"
+    }
+  }
+}
+```
+
+The available modes are:
+
+| Mode         | Description                                                                                                                                                                                 |
+| :----------- | :------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
+| `persistent` | **(Default)** Launches Chrome with a persistent profile stored at `~/.gemini/cli-browser-profile/`. Cookies, history, and settings are preserved between sessions.                          |
+| `isolated`   | Launches Chrome with a temporary profile that is deleted after each session. Use this for clean-state automation.                                                                           |
+| `existing`   | Attaches to an already-running Chrome instance. You must enable remote debugging first by navigating to `chrome://inspect/#remote-debugging` in Chrome. No new browser process is launched. |
+
+#### Configuration reference
+
+All browser-specific settings go under `agents.browser` in your `settings.json`.
+
+| Setting       | Type      | Default        | Description                                                                                     |
+| :------------ | :-------- | :------------- | :---------------------------------------------------------------------------------------------- |
+| `sessionMode` | `string`  | `"persistent"` | How Chrome is managed: `"persistent"`, `"isolated"`, or `"existing"`.                           |
+| `headless`    | `boolean` | `false`        | Run Chrome in headless mode (no visible window).                                                |
+| `profilePath` | `string`  | —              | Custom path to a browser profile directory.                                                     |
+| `visualModel` | `string`  | —              | Model override for the visual agent (for example, `"gemini-2.5-computer-use-preview-10-2025"`). |
+
+#### Security
+
+The browser agent enforces the following security restrictions:
+
+- **Blocked URL patterns:** `file://`, `javascript:`, `data:text/html`,
+  `chrome://extensions`, and `chrome://settings/passwords` are always blocked.
+- **Sensitive action confirmation:** Actions like form filling, file uploads,
+  and form submissions require user confirmation through the standard policy
+  engine.
+
+#### Visual agent
+
+By default, the browser agent interacts with pages through the accessibility
+tree using element `uid` values. For tasks that require visual identification
+(for example, "click the yellow button" or "find the red error message"), you
+can enable the visual agent by setting a `visualModel`:
+
+```json
+{
+  "agents": {
+    "overrides": {
+      "browser_agent": {
+        "enabled": true
+      }
+    },
+    "browser": {
+      "visualModel": "gemini-2.5-computer-use-preview-10-2025"
+    }
+  }
+}
+```
+
+When enabled, the agent gains access to the `analyze_screenshot` tool, which
+captures a screenshot and sends it to the vision model for analysis. The model
+returns coordinates and element descriptions that the browser agent uses with
+the `click_at` tool for precise, coordinate-based interactions.
+
+> **Note:** The visual agent requires API key or Vertex AI authentication. It is
+> not available when using Google Login.
+
+## Creating custom subagents
+
+You can create your own subagents to automate specific workflows or enforce
+specific personas. To use custom subagents, you must enable them in your
 `settings.json`:
 
 ```json
@@ -138,20 +254,20 @@ it yourself; just report it.
 
 ### Configuration schema
 
-| Field          | Type   | Required | Description                                                                                                                |
-| :------------- | :----- | :------- | :------------------------------------------------------------------------------------------------------------------------- |
-| `name`         | string | Yes      | Unique identifier (slug) used as the tool name for the agent. Only lowercase letters, numbers, hyphens, and underscores.   |
-| `description`  | string | Yes      | Short description of what the agent does. This is visible to the main agent to help it decide when to call this sub-agent. |
-| `kind`         | string | No       | `local` (default) or `remote`.                                                                                             |
-| `tools`        | array  | No       | List of tool names this agent can use. If omitted, it may have access to a default set.                                    |
-| `model`        | string | No       | Specific model to use (e.g., `gemini-2.5-pro`). Defaults to `inherit` (uses the main session model).                       |
-| `temperature`  | number | No       | Model temperature (0.0 - 2.0).                                                                                             |
-| `max_turns`    | number | No       | Maximum number of conversation turns allowed for this agent before it must return. Defaults to `15`.                       |
-| `timeout_mins` | number | No       | Maximum execution time in minutes. Defaults to `5`.                                                                        |
+| Field          | Type   | Required | Description                                                                                                               |
+| :------------- | :----- | :------- | :------------------------------------------------------------------------------------------------------------------------ |
+| `name`         | string | Yes      | Unique identifier (slug) used as the tool name for the agent. Only lowercase letters, numbers, hyphens, and underscores.  |
+| `description`  | string | Yes      | Short description of what the agent does. This is visible to the main agent to help it decide when to call this subagent. |
+| `kind`         | string | No       | `local` (default) or `remote`.                                                                                            |
+| `tools`        | array  | No       | List of tool names this agent can use. If omitted, it may have access to a default set.                                   |
+| `model`        | string | No       | Specific model to use (e.g., `gemini-2.5-pro`). Defaults to `inherit` (uses the main session model).                      |
+| `temperature`  | number | No       | Model temperature (0.0 - 2.0).                                                                                            |
+| `max_turns`    | number | No       | Maximum number of conversation turns allowed for this agent before it must return. Defaults to `15`.                      |
+| `timeout_mins` | number | No       | Maximum execution time in minutes. Defaults to `5`.                                                                       |
 
-### Optimizing your sub-agent
+### Optimizing your subagent
 
-The main agent's system prompt encourages it to use an expert sub-agent when one
+The main agent's system prompt encourages it to use an expert subagent when one
 is available. It decides whether an agent is a relevant expert based on the
 agent's description. You can improve the reliability with which an agent is used
 by updating the description to more clearly indicate:
@@ -160,7 +276,7 @@ by updating the description to more clearly indicate:
 - When it should be used.
 - Some example scenarios.
 
-For example, the following sub-agent description should be called fairly
+For example, the following subagent description should be called fairly
 consistently for Git operations.
 
 > Git expert agent which should be used for all local and remote git operations.
@@ -170,13 +286,13 @@ consistently for Git operations.
 > - Searching for regressions with bisect
 > - Interacting with source control and issues providers such as GitHub.
 
-If you need to further tune your sub-agent, you can do so by selecting the model
+If you need to further tune your subagent, you can do so by selecting the model
 to optimize for with `/model` and then asking the model why it does not think
-that your sub-agent was called with a specific prompt and the given description.
+that your subagent was called with a specific prompt and the given description.
 
 ## Remote subagents (Agent2Agent) (experimental)
 
-Gemini CLI can also delegate tasks to remote sub-agents using the Agent-to-Agent
+Gemini CLI can also delegate tasks to remote subagents using the Agent-to-Agent
 (A2A) protocol.
 
 > **Note: Remote subagents are currently an experimental feature.**
@@ -184,8 +300,8 @@ Gemini CLI can also delegate tasks to remote sub-agents using the Agent-to-Agent
 See the [Remote Subagents documentation](/docs/core/remote-agents) for detailed
 configuration and usage instructions.
 
-## Extension sub-agents
+## Extension subagents
 
-Extensions can bundle and distribute sub-agents. See the
-[Extensions documentation](../extensions/index.md#sub-agents) for details on how
+Extensions can bundle and distribute subagents. See the
+[Extensions documentation](../extensions/index.md#subagents) for details on how
 to package agents within an extension.

docs/extensions/reference.md

@@ -116,7 +116,9 @@ The manifest file defines the extension's behavior and configuration.
   "description": "My awesome extension",
   "mcpServers": {
     "my-server": {
-      "command": "node my-server.js"
+      "command": "node",
+      "args": ["${extensionPath}/my-server.js"],
+      "cwd": "${extensionPath}"
     }
   },
   "contextFileName": "GEMINI.md",
@@ -124,19 +126,41 @@ The manifest file defines the extension's behavior and configuration.
 }
 ```
 
-- `name`: A unique identifier for the extension. Use lowercase letters, numbers,
-  and dashes. This name must match the extension's directory name.
-- `version`: The current version of the extension.
-- `description`: A short summary shown in the extension gallery.
-- <a id="mcp-servers"></a>`mcpServers`: A map of Model Context Protocol (MCP)
-  servers. Extension servers follow the same format as standard
-  [CLI configuration](../get-started/configuration.md).
-- `contextFileName`: The name of the context file (defaults to `GEMINI.md`). Can
-  also be an array of strings to load multiple context files.
-- `excludeTools`: An array of tools to block from the model. You can restrict
-  specific arguments, such as `run_shell_command(rm -rf)`.
-- `themes`: An optional list of themes provided by the extension. See
-  [Themes](../cli/themes.md) for more information.
+- `name`: The name of the extension. This is used to uniquely identify the
+  extension and for conflict resolution when extension commands have the same
+  name as user or project commands. The name should be lowercase or numbers and
+  use dashes instead of underscores or spaces. This is how users will refer to
+  your extension in the CLI. Note that we expect this name to match the
+  extension directory name.
+- `version`: The version of the extension.
+- `description`: A short description of the extension. This will be displayed on
+  [geminicli.com/extensions](https://geminicli.com/extensions).
+- `mcpServers`: A map of MCP servers to settings. The key is the name of the
+  server, and the value is the server configuration. These servers will be
+  loaded on startup just like MCP servers defined in a
+  [`settings.json` file](../reference/configuration.md). If both an extension
+  and a `settings.json` file define an MCP server with the same name, the server
+  defined in the `settings.json` file takes precedence.
+  - Note that all MCP server configuration options are supported except for
+    `trust`.
+  - For portability, you should use `${extensionPath}` to refer to files within
+    your extension directory.
+  - Separate your executable and its arguments using `command` and `args`
+    instead of putting them both in `command`.
+- `contextFileName`: The name of the file that contains the context for the
+  extension. This will be used to load the context from the extension directory.
+  If this property is not used but a `GEMINI.md` file is present in your
+  extension directory, then that file will be loaded.
+- `excludeTools`: An array of tool names to exclude from the model. You can also
+  specify command-specific restrictions for tools that support it, like the
+  `run_shell_command` tool. For example,
+  `"excludeTools": ["run_shell_command(rm -rf)"]` will block the `rm -rf`
+  command. Note that this differs from the MCP server `excludeTools`
+  functionality, which can be listed in the MCP server config.
+
+When Gemini CLI starts, it loads all the extensions and merges their
+configurations. If there are any conflicts, the workspace configuration takes
+precedence.
 
 ### Extension settings
 

docs/get-started/authentication.md

@@ -22,8 +22,8 @@ Select the authentication method that matches your situation in the table below:
 ### What is my Google account type?
 
 - **Individual Google accounts:** Includes all
-  [free tier accounts](../quota-and-pricing/#free-usage) such as Gemini Code
-  Assist for individuals, as well as paid subscriptions for
+  [free tier accounts](../resources/quota-and-pricing.md#free-usage) such as
+  Gemini Code Assist for individuals, as well as paid subscriptions for
   [Google AI Pro and Ultra](https://gemini.google/subscriptions/).
 
 - **Organization accounts:** Accounts using paid licenses through an
@@ -317,5 +317,5 @@ configure authentication using environment variables:
 Your authentication method affects your quotas, pricing, Terms of Service, and
 privacy notices. Review the following pages to learn more:
 
-- [Gemini CLI: Quotas and Pricing](../quota-and-pricing.md).
-- [Gemini CLI: Terms of Service and Privacy Notice](../tos-privacy.md).
+- [Gemini CLI: Quotas and Pricing](../resources/quota-and-pricing.md).
+- [Gemini CLI: Terms of Service and Privacy Notice](../resources/tos-privacy.md).

docs/get-started/configuration-v1.md

@@ -1,882 +0,0 @@
-# Gemini CLI configuration
-
-**Note on deprecated configuration format**
-
-This document describes the legacy v1 format for the `settings.json` file. This
-format is now deprecated.
-
-- The new format will be supported in the stable release starting
-  **[09/10/25]**.
-- Automatic migration from the old format to the new format will begin on
-  **[09/17/25]**.
-
-For details on the new, recommended format, please see the
-[current Configuration documentation](./configuration.md).
-
-Gemini CLI offers several ways to configure its behavior, including environment
-variables, command-line arguments, and settings files. This document outlines
-the different configuration methods and available settings.
-
-## Configuration layers
-
-Configuration is applied in the following order of precedence (lower numbers are
-overridden by higher numbers):
-
-1.  **Default values:** Hardcoded defaults within the application.
-2.  **System defaults file:** System-wide default settings that can be
-    overridden by other settings files.
-3.  **User settings file:** Global settings for the current user.
-4.  **Project settings file:** Project-specific settings.
-5.  **System settings file:** System-wide settings that override all other
-    settings files.
-6.  **Environment variables:** System-wide or session-specific variables,
-    potentially loaded from `.env` files.
-7.  **Command-line arguments:** Values passed when launching the CLI.
-
-## Settings files
-
-Gemini CLI uses JSON settings files for persistent configuration. There are four
-locations for these files:
-
-- **System defaults file:**
-  - **Location:** `/etc/gemini-cli/system-defaults.json` (Linux),
-    `C:\ProgramData\gemini-cli\system-defaults.json` (Windows) or
-    `/Library/Application Support/GeminiCli/system-defaults.json` (macOS). The
-    path can be overridden using the `GEMINI_CLI_SYSTEM_DEFAULTS_PATH`
-    environment variable.
-  - **Scope:** Provides a base layer of system-wide default settings. These
-    settings have the lowest precedence and are intended to be overridden by
-    user, project, or system override settings.
-- **User settings file:**
-  - **Location:** `~/.gemini/settings.json` (where `~` is your home directory).
-  - **Scope:** Applies to all Gemini CLI sessions for the current user. User
-    settings override system defaults.
-- **Project settings file:**
-  - **Location:** `.gemini/settings.json` within your project's root directory.
-  - **Scope:** Applies only when running Gemini CLI from that specific project.
-    Project settings override user settings and system defaults.
-- **System settings file:**
-  - **Location:** `/etc/gemini-cli/settings.json` (Linux),
-    `C:\ProgramData\gemini-cli\settings.json` (Windows) or
-    `/Library/Application Support/GeminiCli/settings.json` (macOS). The path can
-    be overridden using the `GEMINI_CLI_SYSTEM_SETTINGS_PATH` environment
-    variable.
-  - **Scope:** Applies to all Gemini CLI sessions on the system, for all users.
-    System settings act as overrides, taking precedence over all other settings
-    files. May be useful for system administrators at enterprises to have
-    controls over users' Gemini CLI setups.
-
-**Note on environment variables in settings:** String values within your
-`settings.json` files can reference environment variables using either
-`$VAR_NAME` or `${VAR_NAME}` syntax. These variables will be automatically
-resolved when the settings are loaded. For example, if you have an environment
-variable `MY_API_TOKEN`, you could use it in `settings.json` like this:
-`"apiKey": "$MY_API_TOKEN"`.
-
-> **Note for Enterprise Users:** For guidance on deploying and managing Gemini
-> CLI in a corporate environment, please see the
-> [Enterprise Configuration](../cli/enterprise.md) documentation.
-
-### The `.gemini` directory in your project
-
-In addition to a project settings file, a project's `.gemini` directory can
-contain other project-specific files related to Gemini CLI's operation, such as:
-
-- [Custom sandbox profiles](#sandboxing) (e.g.,
-  `.gemini/sandbox-macos-custom.sb`, `.gemini/sandbox.Dockerfile`).
-
-### Available settings in `settings.json`:
-
-- **`contextFileName`** (string or array of strings):
-  - **Description:** Specifies the filename for context files (e.g.,
-    `GEMINI.md`, `AGENTS.md`). Can be a single filename or a list of accepted
-    filenames.
-  - **Default:** `GEMINI.md`
-  - **Example:** `"contextFileName": "AGENTS.md"`
-
-- **`bugCommand`** (object):
-  - **Description:** Overrides the default URL for the `/bug` command.
-  - **Default:**
-    `"urlTemplate": "https://github.com/google-gemini/gemini-cli/issues/new?template=bug_report.yml&title={title}&info={info}"`
-  - **Properties:**
-    - **`urlTemplate`** (string): A URL that can contain `{title}` and `{info}`
-      placeholders.
-  - **Example:**
-    ```json
-    "bugCommand": {
-      "urlTemplate": "https://bug.example.com/new?title={title}&info={info}"
-    }
-    ```
-
-- **`fileFiltering`** (object):
-  - **Description:** Controls git-aware file filtering behavior for @ commands
-    and file discovery tools.
-  - **Default:** `"respectGitIgnore": true, "enableRecursiveFileSearch": true`
-  - **Properties:**
-    - **`respectGitIgnore`** (boolean): Whether to respect .gitignore patterns
-      when discovering files. When set to `true`, git-ignored files (like
-      `node_modules/`, `dist/`, `.env`) are automatically excluded from @
-      commands and file listing operations.
-    - **`enableRecursiveFileSearch`** (boolean): Whether to enable searching
-      recursively for filenames under the current tree when completing @
-      prefixes in the prompt.
-    - **`disableFuzzySearch`** (boolean): When `true`, disables the fuzzy search
-      capabilities when searching for files, which can improve performance on
-      projects with a large number of files.
-  - **Example:**
-    ```json
-    "fileFiltering": {
-      "respectGitIgnore": true,
-      "enableRecursiveFileSearch": false,
-      "disableFuzzySearch": true
-    }
-    ```
-
-### Troubleshooting file search performance
-
-If you are experiencing performance issues with file searching (e.g., with `@`
-completions), especially in projects with a very large number of files, here are
-a few things you can try in order of recommendation:
-
-1.  **Use `.geminiignore`:** Create a `.geminiignore` file in your project root
-    to exclude directories that contain a large number of files that you don't
-    need to reference (e.g., build artifacts, logs, `node_modules`). Reducing
-    the total number of files crawled is the most effective way to improve
-    performance.
-
-2.  **Disable fuzzy search:** If ignoring files is not enough, you can disable
-    fuzzy search by setting `disableFuzzySearch` to `true` in your
-    `settings.json` file. This will use a simpler, non-fuzzy matching algorithm,
-    which can be faster.
-
-3.  **Disable recursive file search:** As a last resort, you can disable
-    recursive file search entirely by setting `enableRecursiveFileSearch` to
-    `false`. This will be the fastest option as it avoids a recursive crawl of
-    your project. However, it means you will need to type the full path to files
-    when using `@` completions.
-
-- **`coreTools`** (array of strings):
-  - **Description:** Allows you to specify a list of core tool names that should
-    be made available to the model. This can be used to restrict the set of
-    built-in tools. See [Built-in Tools](../core/tools-api.md#built-in-tools)
-    for a list of core tools. You can also specify command-specific restrictions
-    for tools that support it, like the `ShellTool`. For example,
-    `"coreTools": ["ShellTool(ls -l)"]` will only allow the `ls -l` command to
-    be executed.
-  - **Default:** All tools available for use by the Gemini model.
-  - **Example:** `"coreTools": ["ReadFileTool", "GlobTool", "ShellTool(ls)"]`.
-
-- **`allowedTools`** (array of strings) [DEPRECATED]:
-  - **Default:** `undefined`
-  - **Description:** A list of tool names that will bypass the confirmation
-    dialog. This is useful for tools that you trust and use frequently. The
-    match semantics are the same as `coreTools`. **Deprecated**: Use the
-    [Policy Engine](../core/policy-engine.md) instead.
-  - **Example:** `"allowedTools": ["ShellTool(git status)"]`.
-
-- **`excludeTools`** (array of strings) [DEPRECATED]:
-  - **Description:** Allows you to specify a list of core tool names that should
-    be excluded from the model. A tool listed in both `excludeTools` and
-    `coreTools` is excluded. You can also specify command-specific restrictions
-    for tools that support it, like the `ShellTool`. For example,
-    `"excludeTools": ["ShellTool(rm -rf)"]` will block the `rm -rf` command.
-    **Deprecated**: Use the [Policy Engine](../core/policy-engine.md) instead.
-  - **Default**: No tools excluded.
-  - **Example:** `"excludeTools": ["run_shell_command", "findFiles"]`.
-  - **Security Note:** Command-specific restrictions in `excludeTools` for
-    `run_shell_command` are based on simple string matching and can be easily
-    bypassed. This feature is **not a security mechanism** and should not be
-    relied upon to safely execute untrusted code. It is recommended to use
-    `coreTools` to explicitly select commands that can be executed.
-
-- **`allowMCPServers`** (array of strings):
-  - **Description:** Allows you to specify a list of MCP server names that
-    should be made available to the model. This can be used to restrict the set
-    of MCP servers to connect to. Note that this will be ignored if
-    `--allowed-mcp-server-names` is set.
-  - **Default:** All MCP servers are available for use by the Gemini model.
-  - **Example:** `"allowMCPServers": ["myPythonServer"]`.
-  - **Security note:** This uses simple string matching on MCP server names,
-    which can be modified. If you're a system administrator looking to prevent
-    users from bypassing this, consider configuring the `mcpServers` at the
-    system settings level such that the user will not be able to configure any
-    MCP servers of their own. This should not be used as an airtight security
-    mechanism.
-
-- **`excludeMCPServers`** (array of strings):
-  - **Description:** Allows you to specify a list of MCP server names that
-    should be excluded from the model. A server listed in both
-    `excludeMCPServers` and `allowMCPServers` is excluded. Note that this will
-    be ignored if `--allowed-mcp-server-names` is set.
-  - **Default**: No MCP servers excluded.
-  - **Example:** `"excludeMCPServers": ["myNodeServer"]`.
-  - **Security note:** This uses simple string matching on MCP server names,
-    which can be modified. If you're a system administrator looking to prevent
-    users from bypassing this, consider configuring the `mcpServers` at the
-    system settings level such that the user will not be able to configure any
-    MCP servers of their own. This should not be used as an airtight security
-    mechanism.
-
-- **`theme`** (string):
-  - **Description:** Sets the visual [theme](../cli/themes.md) for Gemini CLI.
-  - **Default:** `"Default"`
-  - **Example:** `"theme": "GitHub"`
-
-- **`vimMode`** (boolean):
-  - **Description:** Enables or disables vim mode for input editing. When
-    enabled, the input area supports vim-style navigation and editing commands
-    with NORMAL and INSERT modes. The vim mode status is displayed in the footer
-    and persists between sessions.
-  - **Default:** `false`
-  - **Example:** `"vimMode": true`
-
-- **`sandbox`** (boolean or string):
-  - **Description:** Controls whether and how to use sandboxing for tool
-    execution. If set to `true`, Gemini CLI uses a pre-built
-    `gemini-cli-sandbox` Docker image. For more information, see
-    [Sandboxing](#sandboxing).
-  - **Default:** `false`
-  - **Example:** `"sandbox": "docker"`
-
-- **`toolDiscoveryCommand`** (string):
-  - **Description:** Defines a custom shell command for discovering tools from
-    your project. The shell command must return on `stdout` a JSON array of
-    [function declarations](https://ai.google.dev/gemini-api/docs/function-calling#function-declarations).
-    Tool wrappers are optional.
-  - **Default:** Empty
-  - **Example:** `"toolDiscoveryCommand": "bin/get_tools"`
-
-- **`toolCallCommand`** (string):
-  - **Description:** Defines a custom shell command for calling a specific tool
-    that was discovered using `toolDiscoveryCommand`. The shell command must
-    meet the following criteria:
-    - It must take function `name` (exactly as in
-      [function declaration](https://ai.google.dev/gemini-api/docs/function-calling#function-declarations))
-      as first command line argument.
-    - It must read function arguments as JSON on `stdin`, analogous to
-      [`functionCall.args`](https://cloud.google.com/vertex-ai/generative-ai/docs/model-reference/inference#functioncall).
-    - It must return function output as JSON on `stdout`, analogous to
-      [`functionResponse.response.content`](https://cloud.google.com/vertex-ai/generative-ai/docs/model-reference/inference#functionresponse).
-  - **Default:** Empty
-  - **Example:** `"toolCallCommand": "bin/call_tool"`
-
-- **`mcpServers`** (object):
-  - **Description:** Configures connections to one or more Model-Context
-    Protocol (MCP) servers for discovering and using custom tools. Gemini CLI
-    attempts to connect to each configured MCP server to discover available
-    tools. If multiple MCP servers expose a tool with the same name, the tool
-    names will be prefixed with the server alias you defined in the
-    configuration (e.g., `serverAlias__actualToolName`) to avoid conflicts. Note
-    that the system might strip certain schema properties from MCP tool
-    definitions for compatibility. At least one of `command`, `url`, or
-    `httpUrl` must be provided. If multiple are specified, the order of
-    precedence is `httpUrl`, then `url`, then `command`.
-  - **Default:** Empty
-  - **Properties:**
-    - **`<SERVER_NAME>`** (object): The server parameters for the named server.
-      - `command` (string, optional): The command to execute to start the MCP
-        server via standard I/O.
-      - `args` (array of strings, optional): Arguments to pass to the command.
-      - `env` (object, optional): Environment variables to set for the server
-        process.
-      - `cwd` (string, optional): The working directory in which to start the
-        server.
-      - `url` (string, optional): The URL of an MCP server that uses Server-Sent
-        Events (SSE) for communication.
-      - `httpUrl` (string, optional): The URL of an MCP server that uses
-        streamable HTTP for communication.
-      - `headers` (object, optional): A map of HTTP headers to send with
-        requests to `url` or `httpUrl`.
-      - `timeout` (number, optional): Timeout in milliseconds for requests to
-        this MCP server.
-      - `trust` (boolean, optional): Trust this server and bypass all tool call
-        confirmations.
-      - `description` (string, optional): A brief description of the server,
-        which may be used for display purposes.
-      - `includeTools` (array of strings, optional): List of tool names to
-        include from this MCP server. When specified, only the tools listed here
-        will be available from this server (allowlist behavior). If not
-        specified, all tools from the server are enabled by default.
-      - `excludeTools` (array of strings, optional): List of tool names to
-        exclude from this MCP server. Tools listed here will not be available to
-        the model, even if they are exposed by the server. **Note:**
-        `excludeTools` takes precedence over `includeTools` - if a tool is in
-        both lists, it will be excluded.
-  - **Example:**
-    ```json
-    "mcpServers": {
-      "myPythonServer": {
-        "command": "python",
-        "args": ["mcp_server.py", "--port", "8080"],
-        "cwd": "./mcp_tools/python",
-        "timeout": 5000,
-        "includeTools": ["safe_tool", "file_reader"],
-      },
-      "myNodeServer": {
-        "command": "node",
-        "args": ["mcp_server.js"],
-        "cwd": "./mcp_tools/node",
-        "excludeTools": ["dangerous_tool", "file_deleter"]
-      },
-      "myDockerServer": {
-        "command": "docker",
-        "args": ["run", "-i", "--rm", "-e", "API_KEY", "ghcr.io/foo/bar"],
-        "env": {
-          "API_KEY": "$MY_API_TOKEN"
-        }
-      },
-      "mySseServer": {
-        "url": "http://localhost:8081/events",
-        "headers": {
-          "Authorization": "Bearer $MY_SSE_TOKEN"
-        },
-        "description": "An example SSE-based MCP server."
-      },
-      "myStreamableHttpServer": {
-        "httpUrl": "http://localhost:8082/stream",
-        "headers": {
-          "X-API-Key": "$MY_HTTP_API_KEY"
-        },
-        "description": "An example Streamable HTTP-based MCP server."
-      }
-    }
-    ```
-
-- **`checkpointing`** (object):
-  - **Description:** Configures the checkpointing feature, which allows you to
-    save and restore conversation and file states. See the
-    [Checkpointing documentation](../cli/checkpointing.md) for more details.
-  - **Default:** `{"enabled": false}`
-  - **Properties:**
-    - **`enabled`** (boolean): When `true`, the `/restore` command is available.
-
-- **`preferredEditor`** (string):
-  - **Description:** Specifies the preferred editor to use for viewing diffs.
-  - **Default:** `vscode`
-  - **Example:** `"preferredEditor": "vscode"`
-
-- **`telemetry`** (object)
-  - **Description:** Configures logging and metrics collection for Gemini CLI.
-    For more information, see [Telemetry](../cli/telemetry.md).
-  - **Default:**
-    `{"enabled": false, "target": "local", "otlpEndpoint": "http://localhost:4317", "logPrompts": true}`
-  - **Properties:**
-    - **`enabled`** (boolean): Whether or not telemetry is enabled.
-    - **`target`** (string): The destination for collected telemetry. Supported
-      values are `local` and `gcp`.
-    - **`otlpEndpoint`** (string): The endpoint for the OTLP Exporter.
-    - **`logPrompts`** (boolean): Whether or not to include the content of user
-      prompts in the logs.
-  - **Example:**
-    ```json
-    "telemetry": {
-      "enabled": true,
-      "target": "local",
-      "otlpEndpoint": "http://localhost:16686",
-      "logPrompts": false
-    }
-    ```
-- **`usageStatisticsEnabled`** (boolean):
-  - **Description:** Enables or disables the collection of usage statistics. See
-    [Usage Statistics](#usage-statistics) for more information.
-  - **Default:** `true`
-  - **Example:**
-    ```json
-    "usageStatisticsEnabled": false
-    ```
-
-- **`hideTips`** (boolean):
-  - **Description:** Enables or disables helpful tips in the CLI interface.
-  - **Default:** `false`
-  - **Example:**
-
-    ```json
-    "hideTips": true
-    ```
-
-- **`hideBanner`** (boolean):
-  - **Description:** Enables or disables the startup banner (ASCII art logo) in
-    the CLI interface.
-  - **Default:** `false`
-  - **Example:**
-
-    ```json
-    "hideBanner": true
-    ```
-
-- **`maxSessionTurns`** (number):
-  - **Description:** Sets the maximum number of turns for a session. If the
-    session exceeds this limit, the CLI will stop processing and start a new
-    chat.
-  - **Default:** `-1` (unlimited)
-  - **Example:**
-    ```json
-    "maxSessionTurns": 10
-    ```
-
-- **`summarizeToolOutput`** (object):
-  - **Description:** Enables or disables the summarization of tool output. You
-    can specify the token budget for the summarization using the `tokenBudget`
-    setting.
-  - Note: Currently only the `run_shell_command` tool is supported.
-  - **Default:** `{}` (Disabled by default)
-  - **Example:**
-    ```json
-    "summarizeToolOutput": {
-      "run_shell_command": {
-        "tokenBudget": 2000
-      }
-    }
-    ```
-
-- **`excludedProjectEnvVars`** (array of strings):
-  - **Description:** Specifies environment variables that should be excluded
-    from being loaded from project `.env` files. This prevents project-specific
-    environment variables (like `DEBUG=true`) from interfering with gemini-cli
-    behavior. Variables from `.gemini/.env` files are never excluded.
-  - **Default:** `["DEBUG", "DEBUG_MODE"]`
-  - **Example:**
-    ```json
-    "excludedProjectEnvVars": ["DEBUG", "DEBUG_MODE", "NODE_ENV"]
-    ```
-
-- **`includeDirectories`** (array of strings):
-  - **Description:** Specifies an array of additional absolute or relative paths
-    to include in the workspace context. Missing directories will be skipped
-    with a warning by default. Paths can use `~` to refer to the user's home
-    directory. This setting can be combined with the `--include-directories`
-    command-line flag.
-  - **Default:** `[]`
-  - **Example:**
-    ```json
-    "includeDirectories": [
-      "/path/to/another/project",
-      "../shared-library",
-      "~/common-utils"
-    ]
-    ```
-
-- **`loadMemoryFromIncludeDirectories`** (boolean):
-  - **Description:** Controls the behavior of the `/memory refresh` command. If
-    set to `true`, `GEMINI.md` files should be loaded from all directories that
-    are added. If set to `false`, `GEMINI.md` should only be loaded from the
-    current directory.
-  - **Default:** `false`
-  - **Example:**
-    ```json
-    "loadMemoryFromIncludeDirectories": true
-    ```
-
-- **`showLineNumbers`** (boolean):
-  - **Description:** Controls whether line numbers are displayed in code blocks
-    in the CLI output.
-  - **Default:** `true`
-  - **Example:**
-    ```json
-    "showLineNumbers": false
-    ```
-
-- **`accessibility`** (object):
-  - **Description:** Configures accessibility features for the CLI.
-  - **Properties:**
-    - **`screenReader`** (boolean): Enables screen reader mode, which adjusts
-      the TUI for better compatibility with screen readers. This can also be
-      enabled with the `--screen-reader` command-line flag, which will take
-      precedence over the setting.
-    - **`disableLoadingPhrases`** (boolean): Disables the display of loading
-      phrases during operations.
-  - **Default:** `{"screenReader": false, "disableLoadingPhrases": false}`
-  - **Example:**
-    ```json
-    "accessibility": {
-      "screenReader": true,
-      "disableLoadingPhrases": true
-    }
-    ```
-
-### Example `settings.json`:
-
-```json
-{
-  "theme": "GitHub",
-  "sandbox": "docker",
-  "toolDiscoveryCommand": "bin/get_tools",
-  "toolCallCommand": "bin/call_tool",
-  "mcpServers": {
-    "mainServer": {
-      "command": "bin/mcp_server.py"
-    },
-    "anotherServer": {
-      "command": "node",
-      "args": ["mcp_server.js", "--verbose"]
-    }
-  },
-  "telemetry": {
-    "enabled": true,
-    "target": "local",
-    "otlpEndpoint": "http://localhost:4317",
-    "logPrompts": true
-  },
-  "usageStatisticsEnabled": true,
-  "hideTips": false,
-  "hideBanner": false,
-  "maxSessionTurns": 10,
-  "summarizeToolOutput": {
-    "run_shell_command": {
-      "tokenBudget": 100
-    }
-  },
-  "excludedProjectEnvVars": ["DEBUG", "DEBUG_MODE", "NODE_ENV"],
-  "includeDirectories": ["path/to/dir1", "~/path/to/dir2", "../path/to/dir3"],
-  "loadMemoryFromIncludeDirectories": true
-}
-```
-
-## Shell history
-
-The CLI keeps a history of shell commands you run. To avoid conflicts between
-different projects, this history is stored in a project-specific directory
-within your user's home folder.
-
-- **Location:** `~/.gemini/tmp/<project_hash>/shell_history`
-  - `<project_hash>` is a unique identifier generated from your project's root
-    path.
-  - The history is stored in a file named `shell_history`.
-
-## Environment variables and `.env` files
-
-Environment variables are a common way to configure applications, especially for
-sensitive information like API keys or for settings that might change between
-environments. For authentication setup, see the
-[Authentication documentation](./authentication.md) which covers all available
-authentication methods.
-
-The CLI automatically loads environment variables from an `.env` file. The
-loading order is:
-
-1.  `.env` file in the current working directory.
-2.  If not found, it searches upwards in parent directories until it finds an
-    `.env` file or reaches the project root (identified by a `.git` folder) or
-    the home directory.
-3.  If still not found, it looks for `~/.env` (in the user's home directory).
-
-**Environment variable exclusion:** Some environment variables (like `DEBUG` and
-`DEBUG_MODE`) are automatically excluded from being loaded from project `.env`
-files to prevent interference with gemini-cli behavior. Variables from
-`.gemini/.env` files are never excluded. You can customize this behavior using
-the `excludedProjectEnvVars` setting in your `settings.json` file.
-
-- **`GEMINI_API_KEY`**:
-  - Your API key for the Gemini API.
-  - One of several available [authentication methods](./authentication.md).
-  - Set this in your shell profile (e.g., `~/.bashrc`, `~/.zshrc`) or an `.env`
-    file.
-- **`GEMINI_MODEL`**:
-  - Specifies the default Gemini model to use.
-  - Overrides the hardcoded default
-  - Example: `export GEMINI_MODEL="gemini-2.5-flash"`
-- **`GOOGLE_API_KEY`**:
-  - Your Google Cloud API key.
-  - Required for using Vertex AI in express mode.
-  - Ensure you have the necessary permissions.
-  - Example: `export GOOGLE_API_KEY="YOUR_GOOGLE_API_KEY"`.
-- **`GOOGLE_CLOUD_PROJECT`**:
-  - Your Google Cloud Project ID.
-  - Required for using Code Assist or Vertex AI.
-  - If using Vertex AI, ensure you have the necessary permissions in this
-    project.
-  - **Cloud Shell note:** When running in a Cloud Shell environment, this
-    variable defaults to a special project allocated for Cloud Shell users. If
-    you have `GOOGLE_CLOUD_PROJECT` set in your global environment in Cloud
-    Shell, it will be overridden by this default. To use a different project in
-    Cloud Shell, you must define `GOOGLE_CLOUD_PROJECT` in a `.env` file.
-  - Example: `export GOOGLE_CLOUD_PROJECT="YOUR_PROJECT_ID"`.
-- **`GOOGLE_APPLICATION_CREDENTIALS`** (string):
-  - **Description:** The path to your Google Application Credentials JSON file.
-  - **Example:**
-    `export GOOGLE_APPLICATION_CREDENTIALS="/path/to/your/credentials.json"`
-- **`OTLP_GOOGLE_CLOUD_PROJECT`**:
-  - Your Google Cloud Project ID for Telemetry in Google Cloud
-  - Example: `export OTLP_GOOGLE_CLOUD_PROJECT="YOUR_PROJECT_ID"`.
-- **`GOOGLE_CLOUD_LOCATION`**:
-  - Your Google Cloud Project Location (e.g., us-central1).
-  - Required for using Vertex AI in non express mode.
-  - Example: `export GOOGLE_CLOUD_LOCATION="YOUR_PROJECT_LOCATION"`.
-- **`GEMINI_SANDBOX`**:
-  - Alternative to the `sandbox` setting in `settings.json`.
-  - Accepts `true`, `false`, `docker`, `podman`, or a custom command string.
-- **`HTTP_PROXY` / `HTTPS_PROXY`**:
-  - Specifies the proxy server to use for outgoing HTTP/HTTPS requests.
-  - Example: `export HTTPS_PROXY="http://proxy.example.com:8080"`
-- **`SEATBELT_PROFILE`** (macOS specific):
-  - Switches the Seatbelt (`sandbox-exec`) profile on macOS.
-  - `permissive-open`: (Default) Restricts writes to the project folder (and a
-    few other folders, see
-    `packages/cli/src/utils/sandbox-macos-permissive-open.sb`) but allows other
-    operations.
-  - `strict`: Uses a strict profile that declines operations by default.
-  - `<profile_name>`: Uses a custom profile. To define a custom profile, create
-    a file named `sandbox-macos-<profile_name>.sb` in your project's `.gemini/`
-    directory (e.g., `my-project/.gemini/sandbox-macos-custom.sb`).
-- **`DEBUG` or `DEBUG_MODE`** (often used by underlying libraries or the CLI
-  itself):
-  - Set to `true` or `1` to enable verbose debug logging, which can be helpful
-    for troubleshooting.
-  - **Note:** These variables are automatically excluded from project `.env`
-    files by default to prevent interference with gemini-cli behavior. Use
-    `.gemini/.env` files if you need to set these for gemini-cli specifically.
-- **`NO_COLOR`**:
-  - Set to any value to disable all color output in the CLI.
-- **`CLI_TITLE`**:
-  - Set to a string to customize the title of the CLI.
-- **`CODE_ASSIST_ENDPOINT`**:
-  - Specifies the endpoint for the code assist server.
-  - This is useful for development and testing.
-
-## Command-line arguments
-
-Arguments passed directly when running the CLI can override other configurations
-for that specific session.
-
-- **`--model <model_name>`** (**`-m <model_name>`**):
-  - Specifies the Gemini model to use for this session.
-  - Example: `npm start -- --model gemini-1.5-pro-latest`
-- **`--prompt <your_prompt>`** (**`-p <your_prompt>`**):
-  - Used to pass a prompt directly to the command. This invokes Gemini CLI in a
-    non-interactive mode.
-- **`--prompt-interactive <your_prompt>`** (**`-i <your_prompt>`**):
-  - Starts an interactive session with the provided prompt as the initial input.
-  - The prompt is processed within the interactive session, not before it.
-  - Cannot be used when piping input from stdin.
-  - Example: `gemini -i "explain this code"`
-- **`--sandbox`** (**`-s`**):
-  - Enables sandbox mode for this session.
-- **`--sandbox-image`**:
-  - Sets the sandbox image URI.
-- **`--debug`** (**`-d`**):
-  - Enables debug mode for this session, providing more verbose output.
-
-- **`--help`** (or **`-h`**):
-  - Displays help information about command-line arguments.
-- **`--show-memory-usage`**:
-  - Displays the current memory usage.
-- **`--yolo`**:
-  - Enables YOLO mode, which automatically approves all tool calls.
-- **`--approval-mode <mode>`**:
-  - Sets the approval mode for tool calls. Available modes:
-    - `default`: Prompt for approval on each tool call (default behavior)
-    - `auto_edit`: Automatically approve edit tools (replace, write_file) while
-      prompting for others
-    - `yolo`: Automatically approve all tool calls (equivalent to `--yolo`)
-  - Cannot be used together with `--yolo`. Use `--approval-mode=yolo` instead of
-    `--yolo` for the new unified approach.
-  - Example: `gemini --approval-mode auto_edit`
-- **`--allowed-tools <tool1,tool2,...>`**:
-  - A comma-separated list of tool names that will bypass the confirmation
-    dialog.
-  - Example: `gemini --allowed-tools "ShellTool(git status)"`
-- **`--telemetry`**:
-  - Enables [telemetry](../cli/telemetry.md).
-- **`--telemetry-target`**:
-  - Sets the telemetry target. See [telemetry](../cli/telemetry.md) for more
-    information.
-- **`--telemetry-otlp-endpoint`**:
-  - Sets the OTLP endpoint for telemetry. See [telemetry](../cli/telemetry.md)
-    for more information.
-- **`--telemetry-otlp-protocol`**:
-  - Sets the OTLP protocol for telemetry (`grpc` or `http`). Defaults to `grpc`.
-    See [telemetry](../cli/telemetry.md) for more information.
-- **`--telemetry-log-prompts`**:
-  - Enables logging of prompts for telemetry. See
-    [telemetry](../cli/telemetry.md) for more information.
-- **`--extensions <extension_name ...>`** (**`-e <extension_name ...>`**):
-  - Specifies a list of extensions to use for the session. If not provided, all
-    available extensions are used.
-  - Use the special term `gemini -e none` to disable all extensions.
-  - Example: `gemini -e my-extension -e my-other-extension`
-- **`--list-extensions`** (**`-l`**):
-  - Lists all available extensions and exits.
-- **`--include-directories <dir1,dir2,...>`**:
-  - Includes additional directories in the workspace for multi-directory
-    support.
-  - Can be specified multiple times or as comma-separated values.
-  - 5 directories can be added at maximum.
-  - Example: `--include-directories /path/to/project1,/path/to/project2` or
-    `--include-directories /path/to/project1 --include-directories /path/to/project2`
-- **`--screen-reader`**:
-  - Enables screen reader mode for accessibility.
-- **`--version`**:
-  - Displays the version of the CLI.
-
-## Context files (hierarchical instructional context)
-
-While not strictly configuration for the CLI's _behavior_, context files
-(defaulting to `GEMINI.md` but configurable via the `contextFileName` setting)
-are crucial for configuring the _instructional context_ (also referred to as
-"memory") provided to the Gemini model. This powerful feature allows you to give
-project-specific instructions, coding style guides, or any relevant background
-information to the AI, making its responses more tailored and accurate to your
-needs. The CLI includes UI elements, such as an indicator in the footer showing
-the number of loaded context files, to keep you informed about the active
-context.
-
-- **Purpose:** These Markdown files contain instructions, guidelines, or context
-  that you want the Gemini model to be aware of during your interactions. The
-  system is designed to manage this instructional context hierarchically.
-
-### Example context file content (e.g., `GEMINI.md`)
-
-Here's a conceptual example of what a context file at the root of a TypeScript
-project might contain:
-
-```markdown
-# Project: My Awesome TypeScript Library
-
-## General Instructions:
-
-- When generating new TypeScript code, please follow the existing coding style.
-- Ensure all new functions and classes have JSDoc comments.
-- Prefer functional programming paradigms where appropriate.
-- All code should be compatible with TypeScript 5.0 and Node.js 20+.
-
-## Coding Style:
-
-- Use 2 spaces for indentation.
-- Interface names should be prefixed with `I` (e.g., `IUserService`).
-- Private class members should be prefixed with an underscore (`_`).
-- Always use strict equality (`===` and `!==`).
-
-## Specific Component: `src/api/client.ts`
-
-- This file handles all outbound API requests.
-- When adding new API call functions, ensure they include robust error handling
-  and logging.
-- Use the existing `fetchWithRetry` utility for all GET requests.
-
-## Regarding Dependencies:
-
-- Avoid introducing new external dependencies unless absolutely necessary.
-- If a new dependency is required, please state the reason.
-```
-
-This example demonstrates how you can provide general project context, specific
-coding conventions, and even notes about particular files or components. The
-more relevant and precise your context files are, the better the AI can assist
-you. Project-specific context files are highly encouraged to establish
-conventions and context.
-
-- **Hierarchical loading and precedence:** The CLI implements a sophisticated
-  hierarchical memory system by loading context files (e.g., `GEMINI.md`) from
-  several locations. Content from files lower in this list (more specific)
-  typically overrides or supplements content from files higher up (more
-  general). The exact concatenation order and final context can be inspected
-  using the `/memory show` command. The typical loading order is:
-  1.  **Global context file:**
-      - Location: `~/.gemini/<contextFileName>` (e.g., `~/.gemini/GEMINI.md` in
-        your user home directory).
-      - Scope: Provides default instructions for all your projects.
-  2.  **Project root and ancestors context files:**
-      - Location: The CLI searches for the configured context file in the
-        current working directory and then in each parent directory up to either
-        the project root (identified by a `.git` folder) or your home directory.
-      - Scope: Provides context relevant to the entire project or a significant
-        portion of it.
-  3.  **Sub-directory context files (contextual/local):**
-      - Location: The CLI also scans for the configured context file in
-        subdirectories _below_ the current working directory (respecting common
-        ignore patterns like `node_modules`, `.git`, etc.). The breadth of this
-        search is limited to 200 directories by default, but can be configured
-        with a `memoryDiscoveryMaxDirs` field in your `settings.json` file.
-      - Scope: Allows for highly specific instructions relevant to a particular
-        component, module, or subsection of your project.
-- **Concatenation and UI indication:** The contents of all found context files
-  are concatenated (with separators indicating their origin and path) and
-  provided as part of the system prompt to the Gemini model. The CLI footer
-  displays the count of loaded context files, giving you a quick visual cue
-  about the active instructional context.
-- **Importing content:** You can modularize your context files by importing
-  other Markdown files using the `@path/to/file.md` syntax. For more details,
-  see the [Memory Import Processor documentation](../core/memport.md).
-- **Commands for memory management:**
-  - Use `/memory refresh` to force a re-scan and reload of all context files
-    from all configured locations. This updates the AI's instructional context.
-  - Use `/memory show` to display the combined instructional context currently
-    loaded, allowing you to verify the hierarchy and content being used by the
-    AI.
-  - See the [Commands documentation](../cli/commands.md#memory) for full details
-    on the `/memory` command and its sub-commands (`show` and `refresh`).
-
-By understanding and utilizing these configuration layers and the hierarchical
-nature of context files, you can effectively manage the AI's memory and tailor
-the Gemini CLI's responses to your specific needs and projects.
-
-## Sandboxing
-
-The Gemini CLI can execute potentially unsafe operations (like shell commands
-and file modifications) within a sandboxed environment to protect your system.
-
-Sandboxing is disabled by default, but you can enable it in a few ways:
-
-- Using `--sandbox` or `-s` flag.
-- Setting `GEMINI_SANDBOX` environment variable.
-- Sandbox is enabled when using `--yolo` or `--approval-mode=yolo` by default.
-
-By default, it uses a pre-built `gemini-cli-sandbox` Docker image.
-
-For project-specific sandboxing needs, you can create a custom Dockerfile at
-`.gemini/sandbox.Dockerfile` in your project's root directory. This Dockerfile
-can be based on the base sandbox image:
-
-```dockerfile
-FROM gemini-cli-sandbox
-
-# Add your custom dependencies or configurations here
-# For example:
-# RUN apt-get update && apt-get install -y some-package
-# COPY ./my-config /app/my-config
-```
-
-When `.gemini/sandbox.Dockerfile` exists, you can use `BUILD_SANDBOX`
-environment variable when running Gemini CLI to automatically build the custom
-sandbox image:
-
-```bash
-BUILD_SANDBOX=1 gemini -s
-```
-
-## Usage statistics
-
-To help us improve the Gemini CLI, we collect anonymized usage statistics. This
-data helps us understand how the CLI is used, identify common issues, and
-prioritize new features.
-
-**What we collect:**
-
-- **Tool calls:** We log the names of the tools that are called, whether they
-  succeed or fail, and how long they take to execute. We do not collect the
-  arguments passed to the tools or any data returned by them.
-- **API requests:** We log the Gemini model used for each request, the duration
-  of the request, and whether it was successful. We do not collect the content
-  of the prompts or responses.
-- **Session information:** We collect information about the configuration of the
-  CLI, such as the enabled tools and the approval mode.
-
-**What we DON'T collect:**
-
-- **Personally identifiable information (PII):** We do not collect any personal
-  information, such as your name, email address, or API keys.
-- **Prompt and response content:** We do not log the content of your prompts or
-  the responses from the Gemini model.
-- **File content:** We do not log the content of any files that are read or
-  written by the CLI.
-
-**How to opt out:**
-
-You can opt out of usage statistics collection at any time by setting the
-`usageStatisticsEnabled` property to `false` in your `settings.json` file:
-
-```json
-{
-  "usageStatisticsEnabled": false
-}
-```

docs/get-started/examples.md

@@ -132,8 +132,8 @@ for your login page.
 
 ## Next steps
 
-- Explore the [User guides](../cli/index.md#user-guides) for detailed
-  walkthroughs of common tasks.
+- Follow the [File management](../cli/tutorials/file-management.md) guide to
+  start working with your codebase.
 - Follow the [Quickstart](./index.md) to start your first session.
 - See the [Cheatsheet](../cli/cli-reference.md) for a quick reference of
   available commands.

docs/get-started/gemini-3.md

@@ -2,6 +2,21 @@
 
 Gemini 3 Pro and Gemini 3 Flash are available on Gemini CLI for all users!
 
+> **Note:** Gemini 3.1 Pro Preview is rolling out. To determine whether you have
+> access to Gemini 3.1, use the `/model` command and select **Manual**. If you
+> have access, you will see `gemini-3.1-pro-preview`.
+>
+> If you have access to Gemini 3.1, it will be included in model routing when
+> you select **Auto (Gemini 3)**. You can also launch the Gemini 3.1 model
+> directly using the `-m` flag:
+>
+> ```
+> gemini -m gemini-3.1-pro-preview
+> ```
+>
+> Learn more about [models](../cli/model.md) and
+> [model routing](../cli/model-routing.md).
+
 ## How to get started with Gemini 3 on Gemini CLI
 
 Get started by upgrading Gemini CLI to the latest version:
@@ -12,9 +27,8 @@ npm install -g @google/gemini-cli@latest
 
 After you’ve confirmed your version is 0.21.1 or later:
 
-1. Use the `/settings` command in Gemini CLI.
-2. Toggle **Preview Features** to `true`.
-3. Run `/model` and select **Auto (Gemini 3)**.
+1. Run `/model`.
+2. Select **Auto (Gemini 3)**.
 
 For more information, see [Gemini CLI model selection](../cli/model.md).
 

docs/get-started/index.md

@@ -54,7 +54,7 @@ Gemini CLI offers several ways to configure its behavior, including environment
 variables, command-line arguments, and settings files.
 
 To explore your configuration options, see
-[Gemini CLI Configuration](./configuration.md).
+[Gemini CLI Configuration](../reference/configuration.md).
 
 ## Use
 
@@ -64,10 +64,19 @@ and more.
 
 To explore the power of Gemini CLI, see [Gemini CLI examples](./examples.md).
 
+## Check usage and quota
+
+You can check your current token usage and quota information using the
+`/stats model` command. This command provides a snapshot of your current
+session's token usage, as well as your overall quota and usage for the supported
+models.
+
+For more information on the `/stats` command and its subcommands, see the
+[Command Reference](../../reference/commands.md#stats).
+
 ## Next steps
 
 - Follow the [File management](../cli/tutorials/file-management.md) guide to
   start working with your codebase.
 - See [Shell commands](../cli/tutorials/shell-commands.md) to learn about
   terminal integration.
-- Explore the full range of [User guides](../cli/index.md#user-guides).

docs/hooks/best-practices.md

@@ -420,7 +420,7 @@ When you open a project with hooks defined in `.gemini/settings.json`:
 
 Hooks inherit the environment of the Gemini CLI process, which may include
 sensitive API keys. Gemini CLI provides a
-[redaction system](/docs/get-started/configuration#environment-variable-redaction)
+[redaction system](/docs/reference/configuration.md#environment-variable-redaction)
 that automatically filters variables matching sensitive patterns (e.g., `KEY`,
 `TOKEN`).
 

docs/hooks/reference.md

@@ -98,6 +98,8 @@ and parameter rewriting.
   - `tool_name`: (`string`) The name of the tool being called.
   - `tool_input`: (`object`) The raw arguments generated by the model.
   - `mcp_context`: (`object`) Optional metadata for MCP-based tools.
+  - `original_request_name`: (`string`) The original name of the tool being
+    called, if this is a tail tool call.
 - **Relevant Output Fields**:
   - `decision`: Set to `"deny"` (or `"block"`) to prevent the tool from
     executing.
@@ -120,12 +122,18 @@ hiding sensitive output from the agent.
   - `tool_response`: (`object`) The result containing `llmContent`,
     `returnDisplay`, and optional `error`.
   - `mcp_context`: (`object`)
+  - `original_request_name`: (`string`) The original name of the tool being
+    called, if this is a tail tool call.
 - **Relevant Output Fields**:
   - `decision`: Set to `"deny"` to hide the real tool output from the agent.
   - `reason`: Required if denied. This text **replaces** the tool result sent
     back to the model.
   - `hookSpecificOutput.additionalContext`: Text that is **appended** to the
     tool result for the agent.
+  - `hookSpecificOutput.tailToolCallRequest`: (`{ name: string, args: object }`)
+    A request to execute another tool immediately after this one. The result of
+    this "tail call" will replace the original tool's response. Ideal for
+    programmatic tool routing.
   - `continue`: Set to `false` to **kill the entire agent loop** immediately.
 - **Exit Code 2 (Block Result)**: Hides the tool result. Uses `stderr` as the
   replacement content sent to the agent. **The turn continues.**

docs/ide-integration/index.md

@@ -170,6 +170,20 @@ messages and how to resolve them.
   - **Solution:** Run `/ide enable` to try and reconnect. If the issue
     continues, open a new terminal window or restart your IDE.
 
+### Manual PID override
+
+If automatic IDE detection fails, or if you are running Gemini CLI in a
+standalone terminal and want to manually associate it with a specific IDE
+instance, you can set the `GEMINI_CLI_IDE_PID` environment variable to the
+process ID (PID) of your IDE.
+
+```bash
+export GEMINI_CLI_IDE_PID=12345
+```
+
+When this variable is set, Gemini CLI will skip automatic detection and attempt
+to connect using the provided PID.
+
 ### Configuration errors
 
 - **Message:**

docs/index.md

@@ -21,8 +21,10 @@ Jump in to Gemini CLI.
   personal and enterprise accounts.
 - **[Examples](./get-started/examples.md):** Practical examples of Gemini CLI in
   action.
-- **[Cheatsheet](./cli/cli-reference.md):** A quick reference for common
+- **[CLI cheatsheet](./cli/cli-reference.md):** A quick reference for common
   commands and options.
+- **[Gemini 3 on Gemini CLI](./get-started/gemini-3.md):** Learn about Gemini 3
+  support in Gemini CLI.
 
 ## Use Gemini CLI
 
@@ -30,6 +32,8 @@ User-focused guides and tutorials for daily development workflows.
 
 - **[File management](./cli/tutorials/file-management.md):** How to work with
   local files and directories.
+- **[Get started with Agent skills](./cli/tutorials/skills-getting-started.md):**
+  Getting started with specialized expertise.
 - **[Manage context and memory](./cli/tutorials/memory-management.md):**
   Managing persistent instructions and facts.
 - **[Execute shell commands](./cli/tutorials/shell-commands.md):** Executing
@@ -40,69 +44,37 @@ User-focused guides and tutorials for daily development workflows.
   complex workflows.
 - **[Web search and fetch](./cli/tutorials/web-tools.md):** Searching and
   fetching content from the web.
-- **[Get started with skills](./cli/tutorials/skills-getting-started.md):**
-  Getting started with specialized expertise.
+- **[Set up an MCP server](./cli/tutorials/mcp-setup.md):** Set up an MCP
+  server.
+- **[Automate tasks](./cli/tutorials/automation.md):** Automate tasks.
 
 ## Features
 
-Technical reference documentation for each capability of Gemini CLI.
+Technical documentation for each capability of Gemini CLI.
 
-- **[/about](./cli/commands.md#about):** About Gemini CLI.
-- **[/auth](./get-started/authentication.md):** Authentication.
-- **[/bug](./cli/commands.md#bug):** Report a bug.
-- **[/chat](./cli/commands.md#chat):** Chat history.
-- **[/clear](./cli/commands.md#clear):** Clear screen.
-- **[/compress](./cli/commands.md#compress):** Compress context.
-- **[/copy](./cli/commands.md#copy):** Copy output.
-- **[/directory](./cli/commands.md#directory-or-dir):** Manage workspace.
-- **[/docs](./cli/commands.md#docs):** Open documentation.
-- **[/editor](./cli/commands.md#editor):** Select editor.
-- **[/extensions](./extensions/index.md):** Manage extensions.
-- **[/help](./cli/commands.md#help-or):** Show help.
-- **[/hooks](./hooks/index.md):** Hooks.
-- **[/ide](./ide-integration/index.md):** IDE integration.
-- **[/init](./cli/commands.md#init):** Initialize context.
-- **[/mcp](./tools/mcp-server.md):** MCP servers.
-- **[/memory](./cli/commands.md#memory):** Manage memory.
-- **[/model](./cli/model.md):** Model selection.
-- **[/policies](./cli/commands.md#policies):** Manage policies.
-- **[/privacy](./cli/commands.md#privacy):** Privacy notice.
-- **[/quit](./cli/commands.md#quit-or-exit):** Exit CLI.
-- **[/restore](./cli/checkpointing.md):** Restore files.
-- **[/resume](./cli/commands.md#resume):** Resume session.
-- **[/rewind](./cli/rewind.md):** Rewind.
-- **[/settings](./cli/settings.md):** Settings.
-- **[/setup-github](./cli/commands.md#setup-github):** GitHub setup.
-- **[/shells](./cli/commands.md#shells-or-bashes):** Manage processes.
-- **[/skills](./cli/skills.md):** Agent skills.
-- **[/stats](./cli/commands.md#stats):** Session statistics.
-- **[/terminal-setup](./cli/commands.md#terminal-setup):** Terminal keybindings.
-- **[/theme](./cli/themes.md):** Themes.
-- **[/tools](./cli/commands.md#tools):** List tools.
-- **[/vim](./cli/commands.md#vim):** Vim mode.
-- **[Activate skill (tool)](./tools/activate-skill.md):** Internal mechanism for
-  loading expert procedures.
-- **[Ask user (tool)](./tools/ask-user.md):** Internal dialog system for
-  clarification.
+- **[Extensions](./extensions/index.md):** Extend Gemini CLI with new tools and
+  capabilities.
+- **[Agent Skills](./cli/skills.md):** Use specialized agents for specific
+  tasks.
 - **[Checkpointing](./cli/checkpointing.md):** Automatic session snapshots.
-- **[File system (tool)](./tools/file-system.md):** Technical details for local
-  file operations.
 - **[Headless mode](./cli/headless.md):** Programmatic and scripting interface.
-- **[Internal documentation (tool)](./tools/internal-docs.md):** Technical
-  lookup for CLI features.
-- **[Memory (tool)](./tools/memory.md):** Storage details for persistent facts.
+- **[Hooks](./hooks/index.md):** Customize Gemini CLI behavior with scripts.
+- **[IDE integration](./ide-integration/index.md):** Integrate Gemini CLI with
+  your favorite IDE.
+- **[MCP servers](./tools/mcp-server.md):** Connect to and use remote agents.
 - **[Model routing](./cli/model-routing.md):** Automatic fallback resilience.
-- **[Plan mode (experimental)](./cli/plan-mode.md):** Use a safe, read-only mode
-  for planning complex changes.
+- **[Model selection](./cli/model.md):** Choose the best model for your needs.
+- **[Plan mode 🔬](./cli/plan-mode.md):** Use a safe, read-only mode for
+  planning complex changes.
+- **[Subagents 🔬](./core/subagents.md):** Using specialized agents for specific
+  tasks.
+- **[Remote subagents 🔬](./core/remote-agents.md):** Connecting to and using
+  remote agents.
+- **[Rewind](./cli/rewind.md):** Rewind and replay sessions.
 - **[Sandboxing](./cli/sandbox.md):** Isolate tool execution.
-- **[Shell (tool)](./tools/shell.md):** Detailed system execution parameters.
+- **[Settings](./cli/settings.md):** Full configuration reference.
 - **[Telemetry](./cli/telemetry.md):** Usage and performance metric details.
-- **[Todo (tool)](./tools/todos.md):** Progress tracking specification.
 - **[Token caching](./cli/token-caching.md):** Performance optimization.
-- **[Web fetch (tool)](./tools/web-fetch.md):** URL retrieval and extraction
-  details.
-- **[Web search (tool)](./tools/web-search.md):** Google Search integration
-  technicals.
 
 ## Configuration
 
@@ -117,7 +89,6 @@ Settings and customization options for Gemini CLI.
   parameters like temperature and thinking budget.
 - **[Project context (GEMINI.md)](./cli/gemini-md.md):** Technical hierarchy of
   context files.
-- **[Settings](./cli/settings.md):** Full configuration reference.
 - **[System prompt override](./cli/system-prompt.md):** Instruction replacement
   logic.
 - **[Themes](./cli/themes.md):** UI personalization technical guide.
@@ -127,20 +98,44 @@ Settings and customization options for Gemini CLI.
 
 Deep technical documentation and API specifications.
 
-- **[Architecture overview](./architecture.md):** System design and components.
-- **[Command reference](./cli/commands.md):** Detailed slash command guide.
-- **[Configuration reference](./get-started/configuration.md):** Settings and
+- **[Command reference](./reference/commands.md):** Detailed slash command
+  guide.
+- **[Configuration reference](./reference/configuration.md):** Settings and
   environment variables.
-- **[Core concepts](./core/concepts.md):** Fundamental terminology and
-  definitions.
-- **[Keyboard shortcuts](./cli/keyboard-shortcuts.md):** Productivity tips.
-- **[Policy engine](./core/policy-engine.md):** Fine-grained execution control.
+- **[Keyboard shortcuts](./reference/keyboard-shortcuts.md):** Productivity
+  tips.
+- **[Memory import processor](./reference/memport.md):** How Gemini CLI
+  processes memory from various sources.
+- **[Policy engine](./reference/policy-engine.md):** Fine-grained execution
+  control.
+- **[Tools API](./reference/tools-api.md):** The API for defining and using
+  tools.
 
 ## Resources
 
 Support, release history, and legal information.
 
-- **[FAQ](./faq.md):** Answers to frequently asked questions.
-- **[Changelogs](./changelogs/index.md):** Highlights and notable changes.
-- **[Quota and pricing](./quota-and-pricing.md):** Limits and billing details.
-- **[Terms and privacy](./tos-privacy.md):** Official notices and terms.
+- **[FAQ](./resources/faq.md):** Answers to frequently asked questions.
+- **[Quota and pricing](./resources/quota-and-pricing.md):** Limits and billing
+  details.
+- **[Terms and privacy](./resources/tos-privacy.md):** Official notices and
+  terms.
+- **[Troubleshooting](./resources/troubleshooting.md):** Common issues and
+  solutions.
+- **[Uninstall](./resources/uninstall.md):** How to uninstall Gemini CLI.
+
+## Development
+
+- **[Contribution guide](/docs/contributing):** How to contribute to Gemini CLI.
+- **[Integration testing](./integration-tests.md):** Running integration tests.
+- **[Issue and PR automation](./issue-and-pr-automation.md):** Automation for
+  issues and pull requests.
+- **[Local development](./local-development.md):** Setting up a local
+  development environment.
+- **[NPM package structure](./npm.md):** The structure of the NPM packages.
+
+## Releases
+
+- **[Release notes](./changelogs/index.md):** Release notes for all versions.
+- **[Stable release](./changelogs/latest.md):** The latest stable release.
+- **[Preview release](./changelogs/preview.md):** The latest preview release.

docs/redirects.json

@@ -0,0 +1,19 @@
+{
+  "/docs/architecture": "/docs/cli/index",
+  "/docs/cli/commands": "/docs/reference/commands",
+  "/docs/cli": "/docs",
+  "/docs/cli/index": "/docs",
+  "/docs/cli/keyboard-shortcuts": "/docs/reference/keyboard-shortcuts",
+  "/docs/cli/uninstall": "/docs/resources/uninstall",
+  "/docs/core/concepts": "/docs",
+  "/docs/core/memport": "/docs/reference/memport",
+  "/docs/core/policy-engine": "/docs/reference/policy-engine",
+  "/docs/core/tools-api": "/docs/reference/tools-api",
+  "/docs/faq": "/docs/resources/faq",
+  "/docs/get-started/configuration": "/docs/reference/configuration",
+  "/docs/get-started/configuration-v1": "/docs/reference/configuration",
+  "/docs/index": "/docs",
+  "/docs/quota-and-pricing": "/docs/resources/quota-and-pricing",
+  "/docs/tos-privacy": "/docs/resources/tos-privacy",
+  "/docs/troubleshooting": "/docs/resources/troubleshooting"
+}

docs/reference/commands.md

@@ -32,6 +32,8 @@ Slash commands provide meta-level control over the CLI itself.
   conversation state interactively, or resuming a previous state from a later
   session.
 - **Sub-commands:**
+  - **`debug`**
+    - **Description:** Export the most recent API request as a JSON payload.
   - **`delete <tag>`**
     - **Description:** Deletes a saved conversation checkpoint.
   - **`list`**
@@ -128,8 +130,29 @@ Slash commands provide meta-level control over the CLI itself.
 
 ### `/extensions`
 
-- **Description:** Lists all active extensions in the current Gemini CLI
-  session. See [Gemini CLI Extensions](../extensions/index.md).
+- **Description:** Manage extensions. See
+  [Gemini CLI Extensions](../extensions/index.md).
+- **Sub-commands:**
+  - **`config`**:
+    - **Description:** Configure extension settings.
+  - **`disable`**:
+    - **Description:** Disable an extension.
+  - **`enable`**:
+    - **Description:** Enable an extension.
+  - **`explore`**:
+    - **Description:** Open extensions page in your browser.
+  - **`install`**:
+    - **Description:** Install an extension from a git repo or local path.
+  - **`link`**:
+    - **Description:** Link an extension from a local path.
+  - **`list`**:
+    - **Description:** List active extensions.
+  - **`restart`**:
+    - **Description:** Restart all extensions.
+  - **`uninstall`**:
+    - **Description:** Uninstall an extension.
+  - **`update`**:
+    - **Description:** Update extensions. Usage: update <extension-names>|--all
 
 ### `/help` (or `/?`)
 
@@ -184,6 +207,10 @@ Slash commands provide meta-level control over the CLI itself.
       servers that support OAuth authentication.
   - **`desc`**
     - **Description:** List configured MCP servers and tools with descriptions.
+  - **`disable`**
+    - **Description:** Disable an MCP server.
+  - **`enable`**
+    - **Description:** Enable a disabled MCP server.
   - **`list`** or **`ls`**:
     - **Description:** List configured MCP servers and tools. This is the
       default action if no subcommand is specified.
@@ -217,11 +244,25 @@ Slash commands provide meta-level control over the CLI itself.
       model.
   - **Note:** For more details on how `GEMINI.md` files contribute to
     hierarchical memory, see the
-    [CLI Configuration documentation](../get-started/configuration.md).
+    [CLI Configuration documentation](./configuration.md).
 
 ### `/model`
 
-- **Description:** Opens a dialog to choose your Gemini model.
+- **Description:** Manage model configuration.
+- **Sub-commands:**
+  - **`manage`**:
+    - **Description:** Opens a dialog to configure the model.
+  - **`set`**:
+    - **Description:** Set the model to use.
+    - **Usage:** `/model set <model-name> [--persist]`
+
+### `/permissions`
+
+- **Description:** Manage folder trust settings and other permissions.
+- **Sub-commands:**
+  - **`trust`**:
+    - **Description:** Manage folder trust settings.
+    - **Usage:** `/permissions trust [<directory-path>]`
 
 ### `/plan`
 
@@ -254,7 +295,7 @@ Slash commands provide meta-level control over the CLI itself.
   checkpoints to restore from.
 - **Usage:** `/restore [tool_call_id]`
 - **Note:** Only available if checkpointing is configured via
-  [settings](../get-started/configuration.md). See
+  [settings](./configuration.md). See
   [Checkpointing documentation](../cli/checkpointing.md) for more details.
 
 ### `/rewind`
@@ -293,7 +334,8 @@ Slash commands provide meta-level control over the CLI itself.
   settings that control the behavior and appearance of Gemini CLI. It is
   equivalent to manually editing the `.gemini/settings.json` file, but with
   validation and guidance to prevent errors. See the
-  [settings documentation](./settings.md) for a full list of available settings.
+  [settings documentation](../cli/settings.md) for a full list of available
+  settings.
 - **Usage:** Simply run `/settings` and the editor will open. You can then
   browse or search for specific settings, view their current values, and modify
   them as desired. Changes to some settings are applied immediately, while
@@ -330,10 +372,16 @@ Slash commands provide meta-level control over the CLI itself.
 ### `/stats`
 
 - **Description:** Display detailed statistics for the current Gemini CLI
-  session, including token usage, cached token savings (when available), and
-  session duration. Note: Cached token information is only displayed when cached
-  tokens are being used, which occurs with API key authentication but not with
-  OAuth authentication at this time.
+  session.
+- **Sub-commands:**
+  - **`session`**:
+    - **Description:** Show session-specific usage statistics, including
+      duration, tool calls, and performance metrics. This is the default view.
+  - **`model`**:
+    - **Description:** Show model-specific usage statistics, including token
+      counts and quota information.
+  - **`tools`**:
+    - **Description:** Show tool-specific usage statistics.
 
 ### `/terminal-setup`
 
@@ -380,7 +428,8 @@ Slash commands provide meta-level control over the CLI itself.
 
 Custom commands allow you to create personalized shortcuts for your most-used
 prompts. For detailed instructions on how to create, manage, and use them,
-please see the dedicated [Custom Commands documentation](./custom-commands.md).
+please see the dedicated
+[Custom Commands documentation](../cli/custom-commands.md).
 
 ## Input prompt shortcuts
 

docs/reference/configuration.md

@@ -1,16 +1,5 @@
 # Gemini CLI configuration
 
-> **Note on configuration format, 9/17/25:** The format of the `settings.json`
-> file has been updated to a new, more organized structure.
->
-> - The new format will be supported in the stable release starting
->   **[09/10/25]**.
-> - Automatic migration from the old format to the new format will begin on
->   **[09/17/25]**.
->
-> For details on the previous format, please see the
-> [v1 Configuration documentation](./configuration-v1.md).
-
 Gemini CLI offers several ways to configure its behavior, including environment
 variables, command-line arguments, and settings files. This document outlines
 the different configuration methods and available settings.
@@ -142,17 +131,28 @@ their corresponding top-level category object in your `settings.json` file.
   - **Default:** `false`
   - **Requires restart:** Yes
 
-- **`general.enablePromptCompletion`** (boolean):
-  - **Description:** Enable AI-powered prompt completion suggestions while
-    typing.
-  - **Default:** `false`
+- **`general.plan.directory`** (string):
+  - **Description:** The directory where planning artifacts are stored. If not
+    specified, defaults to the system temporary directory.
+  - **Default:** `undefined`
   - **Requires restart:** Yes
 
+- **`general.plan.modelRouting`** (boolean):
+  - **Description:** Automatically switch between Pro and Flash models based on
+    Plan Mode status. Uses Pro for the planning phase and Flash for the
+    implementation phase.
+  - **Default:** `true`
+
 - **`general.retryFetchErrors`** (boolean):
   - **Description:** Retry on "exception TypeError: fetch failed sending
     request" errors.
   - **Default:** `false`
 
+- **`general.maxAttempts`** (number):
+  - **Description:** Maximum number of attempts for requests to the main chat
+    model. Cannot exceed 10.
+  - **Default:** `10`
+
 - **`general.debugKeystrokeLogging`** (boolean):
   - **Description:** Enable debug logging of keystrokes to the console.
   - **Default:** `false`
@@ -233,6 +233,11 @@ their corresponding top-level category object in your `settings.json` file.
   - **Default:** `true`
   - **Requires restart:** Yes
 
+- **`ui.showCompatibilityWarnings`** (boolean):
+  - **Description:** Show warnings about terminal or OS compatibility issues.
+  - **Default:** `true`
+  - **Requires restart:** Yes
+
 - **`ui.hideTips`** (boolean):
   - **Description:** Hide helpful tips in the UI
   - **Default:** `false`
@@ -311,13 +316,20 @@ their corresponding top-level category object in your `settings.json` file.
   - **Description:** Show the spinner during operations.
   - **Default:** `true`
 
+- **`ui.loadingPhrases`** (enum):
+  - **Description:** What to show while the model is working: tips, witty
+    comments, both, or nothing.
+  - **Default:** `"tips"`
+  - **Values:** `"tips"`, `"witty"`, `"all"`, `"off"`
+
 - **`ui.customWittyPhrases`** (array):
   - **Description:** Custom witty phrases to display during loading. When
     provided, the CLI cycles through these instead of the defaults.
   - **Default:** `[]`
 
 - **`ui.accessibility.enableLoadingPhrases`** (boolean):
-  - **Description:** Enable loading phrases during operations.
+  - **Description:** @deprecated Use ui.loadingPhrases instead. Enable loading
+    phrases during operations.
   - **Default:** `true`
   - **Requires restart:** Yes
 
@@ -640,6 +652,27 @@ their corresponding top-level category object in your `settings.json` file.
   - **Default:** `{}`
   - **Requires restart:** Yes
 
+- **`agents.browser.sessionMode`** (enum):
+  - **Description:** Session mode: 'persistent', 'isolated', or 'existing'.
+  - **Default:** `"persistent"`
+  - **Values:** `"persistent"`, `"isolated"`, `"existing"`
+  - **Requires restart:** Yes
+
+- **`agents.browser.headless`** (boolean):
+  - **Description:** Run browser in headless mode.
+  - **Default:** `false`
+  - **Requires restart:** Yes
+
+- **`agents.browser.profilePath`** (string):
+  - **Description:** Path to browser profile directory for session persistence.
+  - **Default:** `undefined`
+  - **Requires restart:** Yes
+
+- **`agents.browser.visualModel`** (string):
+  - **Description:** Model override for the visual agent.
+  - **Default:** `undefined`
+  - **Requires restart:** Yes
+
 #### `context`
 
 - **`context.fileName`** (string | string[]):
@@ -867,6 +900,14 @@ their corresponding top-level category object in your `settings.json` file.
   - **Default:** `undefined`
   - **Requires restart:** Yes
 
+- **`security.enableConseca`** (boolean):
+  - **Description:** Enable the context-aware security checker. This feature
+    uses an LLM to dynamically generate and enforce security policies for tool
+    use based on your prompt, providing an additional layer of protection
+    against unintended actions.
+  - **Default:** `false`
+  - **Requires restart:** Yes
+
 #### `advanced`
 
 - **`advanced.autoConfigureMemory`** (boolean):
@@ -947,8 +988,15 @@ their corresponding top-level category object in your `settings.json` file.
   - **Requires restart:** Yes
 
 - **`experimental.useOSC52Paste`** (boolean):
-  - **Description:** Use OSC 52 sequence for pasting instead of clipboardy
-    (useful for remote sessions).
+  - **Description:** Use OSC 52 for pasting. This may be more robust than the
+    default system when using remote terminal sessions (if your terminal is
+    configured to allow it).
+  - **Default:** `false`
+
+- **`experimental.useOSC52Copy`** (boolean):
+  - **Description:** Use OSC 52 for copying. This may be more robust than the
+    default system when using remote terminal sessions (if your terminal is
+    configured to allow it).
   - **Default:** `false`
 
 - **`experimental.plan`** (boolean):
@@ -961,6 +1009,11 @@ their corresponding top-level category object in your `settings.json` file.
     during tool execution.
   - **Default:** `false`
 
+- **`experimental.directWebFetch`** (boolean):
+  - **Description:** Enable web fetch behavior that bypasses LLM summarization.
+  - **Default:** `false`
+  - **Requires restart:** Yes
+
 #### `skills`
 
 - **`skills.enabled`** (boolean):
@@ -1220,8 +1273,8 @@ within your user's home folder.
 Environment variables are a common way to configure applications, especially for
 sensitive information like API keys or for settings that might change between
 environments. For authentication setup, see the
-[Authentication documentation](./authentication.md) which covers all available
-authentication methods.
+[Authentication documentation](../get-started/authentication.md) which covers
+all available authentication methods.
 
 The CLI automatically loads environment variables from an `.env` file. The
 loading order is:
@@ -1240,13 +1293,19 @@ the `advanced.excludedEnvVars` setting in your `settings.json` file.
 
 - **`GEMINI_API_KEY`**:
   - Your API key for the Gemini API.
-  - One of several available [authentication methods](./authentication.md).
+  - One of several available
+    [authentication methods](../get-started/authentication.md).
   - Set this in your shell profile (e.g., `~/.bashrc`, `~/.zshrc`) or an `.env`
     file.
 - **`GEMINI_MODEL`**:
   - Specifies the default Gemini model to use.
   - Overrides the hardcoded default
   - Example: `export GEMINI_MODEL="gemini-3-flash-preview"`
+- **`GEMINI_CLI_IDE_PID`**:
+  - Manually specifies the PID of the IDE process to use for integration. This
+    is useful when running Gemini CLI in a standalone terminal while still
+    wanting to associate it with a specific IDE instance.
+  - Overrides the automatic IDE detection logic.
 - **`GEMINI_CLI_HOME`**:
   - Specifies the root directory for Gemini CLI's user-level configuration and
     storage.
@@ -1586,15 +1645,15 @@ conventions and context.
   about the active instructional context.
 - **Importing content:** You can modularize your context files by importing
   other Markdown files using the `@path/to/file.md` syntax. For more details,
-  see the [Memory Import Processor documentation](../core/memport.md).
+  see the [Memory Import Processor documentation](./memport.md).
 - **Commands for memory management:**
   - Use `/memory refresh` to force a re-scan and reload of all context files
     from all configured locations. This updates the AI's instructional context.
   - Use `/memory show` to display the combined instructional context currently
     loaded, allowing you to verify the hierarchy and content being used by the
     AI.
-  - See the [Commands documentation](../cli/commands.md#memory) for full details
-    on the `/memory` command and its sub-commands (`show` and `refresh`).
+  - See the [Commands documentation](./commands.md#memory) for full details on
+    the `/memory` command and its sub-commands (`show` and `refresh`).
 
 By understanding and utilizing these configuration layers and the hierarchical
 nature of context files, you can effectively manage the AI's memory and tailor

docs/reference/policy-engine.md

@@ -64,9 +64,11 @@ primary conditions are the tool's name and its arguments.
 
 The `toolName` in the rule must match the name of the tool being called.
 
-- **Wildcards**: For Model-hosting-protocol (MCP) servers, you can use a
-  wildcard. A `toolName` of `my-server__*` will match any tool from the
-  `my-server` MCP.
+- **Wildcards**: You can use wildcards to match multiple tools.
+  - `*`: Matches **any tool** (built-in or MCP).
+  - `server__*`: Matches any tool from a specific MCP server.
+  - `*__toolName`: Matches a specific tool name across **all** MCP servers.
+  - `*__*`: Matches **any tool from any MCP server**.
 
 #### Arguments pattern
 
@@ -92,11 +94,12 @@ rule with the highest priority wins**.
 To provide a clear hierarchy, policies are organized into three tiers. Each tier
 has a designated number that forms the base of the final priority calculation.
 
-| Tier    | Base | Description                                                                |
-| :------ | :--- | :------------------------------------------------------------------------- |
-| Default | 1    | Built-in policies that ship with the Gemini CLI.                           |
-| User    | 2    | Custom policies defined by the user.                                       |
-| Admin   | 3    | Policies managed by an administrator (e.g., in an enterprise environment). |
+| Tier      | Base | Description                                                                |
+| :-------- | :--- | :------------------------------------------------------------------------- |
+| Default   | 1    | Built-in policies that ship with the Gemini CLI.                           |
+| Workspace | 2    | Policies defined in the current workspace's configuration directory.       |
+| User      | 3    | Custom policies defined by the user.                                       |
+| Admin     | 4    | Policies managed by an administrator (e.g., in an enterprise environment). |
 
 Within a TOML policy file, you assign a priority value from **0 to 999**. The
 engine transforms this into a final priority using the following formula:
@@ -105,15 +108,17 @@ engine transforms this into a final priority using the following formula:
 
 This system guarantees that:
 
-- Admin policies always override User and Default policies.
-- User policies always override Default policies.
+- Admin policies always override User, Workspace, and Default policies.
+- User policies override Workspace and Default policies.
+- Workspace policies override Default policies.
 - You can still order rules within a single tier with fine-grained control.
 
 For example:
 
 - A `priority: 50` rule in a Default policy file becomes `1.050`.
-- A `priority: 100` rule in a User policy file becomes `2.100`.
-- A `priority: 20` rule in an Admin policy file becomes `3.020`.
+- A `priority: 10` rule in a Workspace policy policy file becomes `2.010`.
+- A `priority: 100` rule in a User policy file becomes `3.100`.
+- A `priority: 20` rule in an Admin policy file becomes `4.020`.
 
 ### Approval modes
 
@@ -141,9 +146,9 @@ A rule matches a tool call if all of its conditions are met:
 
 1.  **Tool name**: The `toolName` in the rule must match the name of the tool
     being called.
-    - **Wildcards**: For Model-hosting-protocol (MCP) servers, you can use a
-      wildcard. A `toolName` of `my-server__*` will match any tool from the
-      `my-server` MCP.
+    - **Wildcards**: You can use wildcards like `*`, `server__*`, or
+      `*__toolName` to match multiple tools. See [Tool Name](#tool-name) for
+      details.
 2.  **Arguments pattern**: If `argsPattern` is specified, the tool's arguments
     are converted to a stable JSON string, which is then tested against the
     provided regular expression. If the arguments don't match the pattern, the
@@ -156,10 +161,11 @@ User, and (if configured) Admin directories.
 
 ### Policy locations
 
-| Tier      | Type   | Location                    |
-| :-------- | :----- | :-------------------------- |
-| **User**  | Custom | `~/.gemini/policies/*.toml` |
-| **Admin** | System | _See below (OS specific)_   |
+| Tier          | Type   | Location                                  |
+| :------------ | :----- | :---------------------------------------- |
+| **User**      | Custom | `~/.gemini/policies/*.toml`               |
+| **Workspace** | Custom | `$WORKSPACE_ROOT/.gemini/policies/*.toml` |
+| **Admin**     | System | _See below (OS specific)_                 |
 
 #### System-wide policies (Admin)
 
@@ -199,6 +205,10 @@ toolName = "run_shell_command"
 # to form a composite name like "mcpName__toolName".
 mcpName = "my-custom-server"
 
+# (Optional) Metadata hints provided by the tool. A rule matches if all
+# key-value pairs provided here are present in the tool's annotations.
+toolAnnotations = { readOnlyHint = true }
+
 # (Optional) A regex to match against the tool's arguments.
 argsPattern = '"command":"(git|npm)'
 
@@ -268,13 +278,12 @@ priority = 100
 
 ### Special syntax for MCP tools
 
-You can create rules that target tools from Model-hosting-protocol (MCP) servers
-using the `mcpName` field or a wildcard pattern.
+You can create rules that target tools from Model Context Protocol (MCP) servers
+using the `mcpName` field or composite wildcard patterns.
 
-**1. Using `mcpName`**
+**1. Targeting a specific tool on a server**
 
-To target a specific tool from a specific server, combine `mcpName` and
-`toolName`.
+Combine `mcpName` and `toolName` to target a single operation.
 
 ```toml
 # Allows the `search` tool on the `my-jira-server` MCP
@@ -285,10 +294,10 @@ decision = "allow"
 priority = 200
 ```
 
-**2. Using a wildcard**
+**2. Targeting all tools on a specific server**
 
-To create a rule that applies to _all_ tools on a specific MCP server, specify
-only the `mcpName`.
+Specify only the `mcpName` to apply a rule to every tool provided by that
+server.
 
 ```toml
 # Denies all tools from the `untrusted-server` MCP
@@ -299,6 +308,33 @@ priority = 500
 deny_message = "This server is not trusted by the admin."
 ```
 
+**3. Targeting all MCP servers**
+
+Use `mcpName = "*"` to create a rule that applies to **all** tools from **any**
+registered MCP server. This is useful for setting category-wide defaults.
+
+```toml
+# Ask user for any tool call from any MCP server
+[[rule]]
+mcpName = "*"
+decision = "ask_user"
+priority = 10
+```
+
+**4. Targeting a tool name across all servers**
+
+Use `mcpName = "*"` with a specific `toolName` to target that operation
+regardless of which server provides it.
+
+```toml
+# Allow the `search` tool across all connected MCP servers
+[[rule]]
+mcpName = "*"
+toolName = "search"
+decision = "allow"
+priority = 50
+```
+
 ## Default policies
 
 The Gemini CLI ships with a set of default policies to provide a safe

docs/resources/faq.md

@@ -104,7 +104,7 @@ The Gemini CLI configuration is stored in two `settings.json` files:
 1.  In your home directory: `~/.gemini/settings.json`.
 2.  In your project's root directory: `./.gemini/settings.json`.
 
-Refer to [Gemini CLI Configuration](./get-started/configuration.md) for more
+Refer to [Gemini CLI Configuration](../reference/configuration.md) for more
 details.
 
 ## Google AI Pro/Ultra and subscription FAQs

docs/resources/quota-and-pricing.md

@@ -135,6 +135,18 @@ Flow video editor). These plans do not apply to the API usage which powers the
 Gemini CLI. Supporting these plans is under active consideration for future
 support.
 
+## Check usage and quota
+
+You can check your current token usage and quota information using the
+`/stats model` command. This command provides a snapshot of your current
+session's token usage, as well as your overall quota and usage for the supported
+models.
+
+For more information on the `/stats` command and its subcommands, see the
+[Command Reference](../../reference/commands.md#stats).
+
+A summary of model usage is also presented on exit at the end of a session.
+
 ## Tips to avoid high costs
 
 When using a Pay as you Go API key, be mindful of your usage to avoid unexpected
@@ -151,8 +163,3 @@ costs.
   models directly.
 - Vertex AI: This is the enterprise-grade platform for building, deploying, and
   managing Gemini models with specific security and control requirements.
-
-## Understanding your usage
-
-A summary of model usage is available through the `/stats` command and presented
-on exit at the end of a session.

docs/resources/tos-privacy.md

@@ -10,8 +10,8 @@ and Privacy Notices applicable to those services apply to such access and use.
 Your Gemini CLI Usage Statistics are handled in accordance with Google's Privacy
 Policy.
 
-**Note:** See [quotas and pricing](/docs/quota-and-pricing.md) for the quota and
-pricing details that apply to your usage of the Gemini CLI.
+**Note:** See [quotas and pricing](/docs/resources/quota-and-pricing.md) for the
+quota and pricing details that apply to your usage of the Gemini CLI.
 
 ## Supported authentication methods
 
@@ -93,4 +93,4 @@ backend, these Terms of Service and Privacy Notice documents apply:
 
 You may opt-out from sending Gemini CLI Usage Statistics to Google by following
 the instructions available here:
-[Usage Statistics Configuration](https://github.com/google-gemini/gemini-cli/blob/main/docs/get-started/configuration.md#usage-statistics).
+[Usage Statistics Configuration](https://github.com/google-gemini/gemini-cli/blob/main/docs/reference/configuration.md#usage-statistics).

docs/resources/troubleshooting.md

@@ -93,7 +93,7 @@ topics on:
   - **Cause:** When sandboxing is enabled, Gemini CLI may attempt operations
     that are restricted by your sandbox configuration, such as writing outside
     the project directory or system temp directory.
-  - **Solution:** Refer to the [Configuration: Sandboxing](./cli/sandbox.md)
+  - **Solution:** Refer to the [Configuration: Sandboxing](../cli/sandbox.md)
     documentation for more information, including how to customize your sandbox
     configuration.
 

docs/sidebar.json

@@ -1,189 +1,226 @@
 [
   {
-    "label": "Get started",
-    "items": [
-      { "label": "Overview", "slug": "docs" },
-      { "label": "Quickstart", "slug": "docs/get-started" },
-      { "label": "Installation", "slug": "docs/get-started/installation" },
-      { "label": "Authentication", "slug": "docs/get-started/authentication" },
-      { "label": "Examples", "slug": "docs/get-started/examples" },
-      { "label": "CLI cheatsheet", "slug": "docs/cli/cli-reference" },
-      { "label": "Gemini 3 on Gemini CLI", "slug": "docs/get-started/gemini-3" }
-    ]
-  },
-  {
-    "label": "Use Gemini CLI",
+    "label": "docs_tab",
     "items": [
       {
-        "label": "File management",
-        "slug": "docs/cli/tutorials/file-management"
+        "label": "Get started",
+        "items": [
+          { "label": "Overview", "slug": "docs" },
+          { "label": "Quickstart", "slug": "docs/get-started" },
+          { "label": "Installation", "slug": "docs/get-started/installation" },
+          {
+            "label": "Authentication",
+            "slug": "docs/get-started/authentication"
+          },
+          { "label": "Examples", "slug": "docs/get-started/examples" },
+          { "label": "CLI cheatsheet", "slug": "docs/cli/cli-reference" },
+          {
+            "label": "Gemini 3 on Gemini CLI",
+            "slug": "docs/get-started/gemini-3"
+          }
+        ]
       },
       {
-        "label": "Manage context and memory",
-        "slug": "docs/cli/tutorials/memory-management"
+        "label": "Use Gemini CLI",
+        "items": [
+          {
+            "label": "File management",
+            "slug": "docs/cli/tutorials/file-management"
+          },
+          {
+            "label": "Get started with Agent skills",
+            "slug": "docs/cli/tutorials/skills-getting-started"
+          },
+          {
+            "label": "Manage context and memory",
+            "slug": "docs/cli/tutorials/memory-management"
+          },
+          {
+            "label": "Execute shell commands",
+            "slug": "docs/cli/tutorials/shell-commands"
+          },
+          {
+            "label": "Manage sessions and history",
+            "slug": "docs/cli/tutorials/session-management"
+          },
+          {
+            "label": "Plan tasks with todos",
+            "slug": "docs/cli/tutorials/task-planning"
+          },
+          {
+            "label": "Web search and fetch",
+            "slug": "docs/cli/tutorials/web-tools"
+          },
+          {
+            "label": "Set up an MCP server",
+            "slug": "docs/cli/tutorials/mcp-setup"
+          },
+          { "label": "Automate tasks", "slug": "docs/cli/tutorials/automation" }
+        ]
       },
       {
-        "label": "Execute shell commands",
-        "slug": "docs/cli/tutorials/shell-commands"
+        "label": "Features",
+        "items": [
+          {
+            "label": "Extensions",
+            "collapsed": true,
+            "items": [
+              {
+                "label": "Overview",
+                "slug": "docs/extensions"
+              },
+              {
+                "label": "User guide: Install and manage",
+                "link": "/docs/extensions/#manage-extensions"
+              },
+              {
+                "label": "Developer guide: Build extensions",
+                "slug": "docs/extensions/writing-extensions"
+              },
+              {
+                "label": "Developer guide: Best practices",
+                "slug": "docs/extensions/best-practices"
+              },
+              {
+                "label": "Developer guide: Releasing",
+                "slug": "docs/extensions/releasing"
+              },
+              {
+                "label": "Developer guide: Reference",
+                "slug": "docs/extensions/reference"
+              }
+            ]
+          },
+          { "label": "Agent Skills", "slug": "docs/cli/skills" },
+          { "label": "Checkpointing", "slug": "docs/cli/checkpointing" },
+          { "label": "Headless mode", "slug": "docs/cli/headless" },
+          { "label": "Hooks", "slug": "docs/hooks" },
+          { "label": "IDE integration", "slug": "docs/ide-integration" },
+          { "label": "MCP servers", "slug": "docs/tools/mcp-server" },
+          { "label": "Model routing", "slug": "docs/cli/model-routing" },
+          { "label": "Model selection", "slug": "docs/cli/model" },
+          { "label": "Plan mode", "badge": "🔬", "slug": "docs/cli/plan-mode" },
+          {
+            "label": "Subagents",
+            "badge": "🔬",
+            "slug": "docs/core/subagents"
+          },
+          {
+            "label": "Remote subagents",
+            "badge": "🔬",
+            "slug": "docs/core/remote-agents"
+          },
+          { "label": "Rewind", "slug": "docs/cli/rewind" },
+          { "label": "Sandboxing", "slug": "docs/cli/sandbox" },
+          { "label": "Settings", "slug": "docs/cli/settings" },
+          { "label": "Telemetry", "slug": "docs/cli/telemetry" },
+          { "label": "Token caching", "slug": "docs/cli/token-caching" }
+        ]
       },
       {
-        "label": "Manage sessions and history",
-        "slug": "docs/cli/tutorials/session-management"
+        "label": "Configuration",
+        "items": [
+          { "label": "Custom commands", "slug": "docs/cli/custom-commands" },
+          {
+            "label": "Enterprise configuration",
+            "slug": "docs/cli/enterprise"
+          },
+          {
+            "label": "Ignore files (.geminiignore)",
+            "slug": "docs/cli/gemini-ignore"
+          },
+          {
+            "label": "Model configuration",
+            "slug": "docs/cli/generation-settings"
+          },
+          {
+            "label": "Project context (GEMINI.md)",
+            "slug": "docs/cli/gemini-md"
+          },
+          { "label": "Settings", "slug": "docs/cli/settings" },
+          {
+            "label": "System prompt override",
+            "slug": "docs/cli/system-prompt"
+          },
+          { "label": "Themes", "slug": "docs/cli/themes" },
+          { "label": "Trusted folders", "slug": "docs/cli/trusted-folders" }
+        ]
       },
       {
-        "label": "Plan tasks with todos",
-        "slug": "docs/cli/tutorials/task-planning"
-      },
-      {
-        "label": "Web search and fetch",
-        "slug": "docs/cli/tutorials/web-tools"
-      },
-      {
-        "label": "Get started with skills",
-        "slug": "docs/cli/tutorials/skills-getting-started"
-      },
-      {
-        "label": "Set up an MCP server",
-        "slug": "docs/cli/tutorials/mcp-setup"
-      },
-      { "label": "Automate tasks", "slug": "docs/cli/tutorials/automation" }
-    ]
-  },
-  {
-    "label": "Features",
-    "items": [
-      { "label": "Agent Skills", "slug": "docs/cli/skills" },
-      {
-        "label": "Authentication",
-        "slug": "docs/get-started/authentication"
-      },
-      { "label": "Checkpointing", "slug": "docs/cli/checkpointing" },
-      {
-        "label": "Extensions",
-        "slug": "docs/extensions/index"
-      },
-      { "label": "Headless mode", "slug": "docs/cli/headless" },
-      { "label": "Help", "link": "/docs/cli/commands/#help-or" },
-      { "label": "Hooks", "slug": "docs/hooks" },
-      { "label": "IDE integration", "slug": "docs/ide-integration" },
-      { "label": "MCP servers", "slug": "docs/tools/mcp-server" },
-      {
-        "label": "Memory management",
-        "link": "/docs/cli/commands/#memory"
-      },
-      { "label": "Model routing", "slug": "docs/cli/model-routing" },
-      { "label": "Model selection", "slug": "docs/cli/model" },
-      { "label": "Plan mode (experimental)", "slug": "docs/cli/plan-mode" },
-      { "label": "Rewind", "slug": "docs/cli/rewind" },
-      { "label": "Sandboxing", "slug": "docs/cli/sandbox" },
-      { "label": "Settings", "slug": "docs/cli/settings" },
-      {
-        "label": "Shell",
-        "link": "/docs/cli/commands/#shells-or-bashes"
-      },
-      {
-        "label": "Stats",
-        "link": "/docs/cli/commands/#stats"
-      },
-      { "label": "Telemetry", "slug": "docs/cli/telemetry" },
-      { "label": "Token caching", "slug": "docs/cli/token-caching" },
-      { "label": "Tools", "link": "/docs/cli/commands/#tools" }
-    ]
-  },
-  {
-    "label": "Configuration",
-    "items": [
-      { "label": "Custom commands", "slug": "docs/cli/custom-commands" },
-      { "label": "Enterprise configuration", "slug": "docs/cli/enterprise" },
-      {
-        "label": "Ignore files (.geminiignore)",
-        "slug": "docs/cli/gemini-ignore"
-      },
-      {
-        "label": "Model configuration",
-        "slug": "docs/cli/generation-settings"
-      },
-      { "label": "Project context (GEMINI.md)", "slug": "docs/cli/gemini-md" },
-      { "label": "Settings", "slug": "docs/cli/settings" },
-      { "label": "System prompt override", "slug": "docs/cli/system-prompt" },
-      { "label": "Themes", "slug": "docs/cli/themes" },
-      { "label": "Trusted folders", "slug": "docs/cli/trusted-folders" }
-    ]
-  },
-  {
-    "label": "Extensions",
-    "items": [
-      {
-        "label": "Overview",
-        "slug": "docs/extensions"
-      },
-      {
-        "label": "User guide: Install and manage",
-        "link": "/docs/extensions/#manage-extensions"
-      },
-      {
-        "label": "Developer guide: Build extensions",
-        "slug": "docs/extensions/writing-extensions"
-      },
-      {
-        "label": "Developer guide: Best practices",
-        "slug": "docs/extensions/best-practices"
-      },
-      {
-        "label": "Developer guide: Releasing",
-        "slug": "docs/extensions/releasing"
-      },
-      {
-        "label": "Developer guide: Reference",
-        "slug": "docs/extensions/reference"
+        "label": "Development",
+        "items": [
+          { "label": "Contribution guide", "slug": "docs/contributing" },
+          { "label": "Integration testing", "slug": "docs/integration-tests" },
+          {
+            "label": "Issue and PR automation",
+            "slug": "docs/issue-and-pr-automation"
+          },
+          { "label": "Local development", "slug": "docs/local-development" },
+          { "label": "NPM package structure", "slug": "docs/npm" }
+        ]
       }
     ]
   },
   {
-    "label": "Reference",
+    "label": "reference_tab",
     "items": [
-      { "label": "Architecture", "slug": "docs/architecture" },
-      { "label": "Command reference", "slug": "docs/cli/commands" },
       {
-        "label": "Configuration reference",
-        "slug": "docs/get-started/configuration"
-      },
-      { "label": "Core concepts", "slug": "docs/core/concepts" },
-      { "label": "Keyboard shortcuts", "slug": "docs/cli/keyboard-shortcuts" },
-      { "label": "Memory import processor", "slug": "docs/core/memport" },
-      { "label": "Policy engine", "slug": "docs/core/policy-engine" },
-      { "label": "Tools API", "slug": "docs/core/tools-api" }
+        "label": "Reference",
+        "items": [
+          { "label": "Command reference", "slug": "docs/reference/commands" },
+          {
+            "label": "Configuration reference",
+            "slug": "docs/reference/configuration"
+          },
+          {
+            "label": "Keyboard shortcuts",
+            "slug": "docs/reference/keyboard-shortcuts"
+          },
+          {
+            "label": "Memory import processor",
+            "slug": "docs/reference/memport"
+          },
+          { "label": "Policy engine", "slug": "docs/reference/policy-engine" },
+          { "label": "Tools API", "slug": "docs/reference/tools-api" }
+        ]
+      }
     ]
   },
   {
-    "label": "Resources",
+    "label": "resources_tab",
     "items": [
-      { "label": "FAQ", "slug": "docs/faq" },
-      { "label": "Quota and pricing", "slug": "docs/quota-and-pricing" },
-      { "label": "Terms and privacy", "slug": "docs/tos-privacy" },
-      { "label": "Troubleshooting", "slug": "docs/troubleshooting" },
-      { "label": "Uninstall", "slug": "docs/cli/uninstall" }
-    ]
-  },
-  {
-    "label": "Development",
-    "items": [
-      { "label": "Contribution guide", "slug": "docs/contributing" },
-      { "label": "Integration testing", "slug": "docs/integration-tests" },
       {
-        "label": "Issue and PR automation",
-        "slug": "docs/issue-and-pr-automation"
-      },
-      { "label": "Local development", "slug": "docs/local-development" },
-      { "label": "NPM package structure", "slug": "docs/npm" }
+        "label": "Resources",
+        "items": [
+          { "label": "FAQ", "slug": "docs/resources/faq" },
+          {
+            "label": "Quota and pricing",
+            "slug": "docs/resources/quota-and-pricing"
+          },
+          {
+            "label": "Terms and privacy",
+            "slug": "docs/resources/tos-privacy"
+          },
+          {
+            "label": "Troubleshooting",
+            "slug": "docs/resources/troubleshooting"
+          },
+          { "label": "Uninstall", "slug": "docs/resources/uninstall" }
+        ]
+      }
     ]
   },
   {
-    "label": "Releases",
+    "label": "releases_tab",
     "items": [
-      { "label": "Release notes", "slug": "docs/changelogs/" },
-      { "label": "Stable release", "slug": "docs/changelogs/latest" },
-      { "label": "Preview release", "slug": "docs/changelogs/preview" }
+      {
+        "label": "Releases",
+        "items": [
+          { "label": "Release notes", "slug": "docs/changelogs/" },
+          { "label": "Stable release", "slug": "docs/changelogs/latest" },
+          { "label": "Preview release", "slug": "docs/changelogs/preview" }
+        ]
+      }
     ]
   }
 ]

docs/tools/file-system.md

@@ -105,10 +105,11 @@ lines containing matches, along with their file paths and line numbers.
 
 ## 6. `replace` (Edit)
 
-`replace` replaces text within a file. By default, replaces a single occurrence,
-but can replace multiple occurrences when `expected_replacements` is specified.
-This tool is designed for precise, targeted changes and requires significant
-context around the `old_string` to ensure it modifies the correct location.
+`replace` replaces text within a file. By default, the tool expects to find and
+replace exactly ONE occurrence of `old_string`. If you want to replace multiple
+occurrences of the exact same string, set `allow_multiple` to `true`. This tool
+is designed for precise, targeted changes and requires significant context
+around the `old_string` to ensure it modifies the correct location.
 
 - **Tool name:** `replace`
 - **Arguments:**
@@ -116,6 +117,8 @@ context around the `old_string` to ensure it modifies the correct location.
   - `instruction` (string, required): Semantic description of the change.
   - `old_string` (string, required): Exact literal text to find.
   - `new_string` (string, required): Exact literal text to replace with.
+  - `allow_multiple` (boolean, optional): If `true`, replaces all occurrences.
+    If `false` (default), only succeeds if exactly one occurrence is found.
 - **Confirmation:** Requires manual user approval.
 
 ## Next steps

docs/tools/index.md

@@ -52,6 +52,9 @@ These tools help the model manage its plan and interact with you.
   complex plans.
 - **[Agent Skills](../cli/skills.md) (`activate_skill`):** Loads specialized
   procedural expertise when needed.
+- **[Browser agent](../core/subagents.md#browser-agent-experimental)
+  (`browser_agent`):** Automates web browser tasks through the accessibility
+  tree.
 - **Internal docs (`get_internal_docs`):** Accesses Gemini CLI's own
   documentation to help answer your questions.
 
@@ -98,5 +101,5 @@ Always review confirmation prompts carefully before allowing a tool to execute.
 ## Next steps
 
 - Learn how to [Provide context](../cli/gemini-md.md) to guide tool use.
-- Explore the [Command reference](../cli/commands.md) for tool-related slash
-  commands.
+- Explore the [Command reference](../reference/commands.md) for tool-related
+  slash commands.

docs/tools/internal-docs.md

@@ -14,8 +14,8 @@ provides direct access to the Markdown files in the `docs/` directory.
 `get_internal_docs` takes one optional argument:
 
 - `path` (string, optional): The relative path to a specific documentation file
-  (for example, `cli/commands.md`). If omitted, the tool returns a list of all
-  available documentation paths.
+  (for example, `reference/commands.md`). If omitted, the tool returns a list of
+  all available documentation paths.
 
 ## Usage
 
@@ -40,7 +40,7 @@ Gemini CLI uses this tool to ensure technical accuracy:
 
 ## Next steps
 
-- Explore the [Command reference](../cli/commands.md) for a detailed guide to
-  slash commands.
-- See the [Configuration guide](../get-started/configuration.md) for settings
+- Explore the [Command reference](../reference/commands.md) for a detailed guide
+  to slash commands.
+- See the [Configuration guide](../reference/configuration.md) for settings
   reference.

docs/tools/mcp-server.md

@@ -163,7 +163,8 @@ Each server configuration supports the following properties:
 - **`args`** (string[]): Command-line arguments for Stdio transport
 - **`headers`** (object): Custom HTTP headers when using `url` or `httpUrl`
 - **`env`** (object): Environment variables for the server process. Values can
-  reference environment variables using `$VAR_NAME` or `${VAR_NAME}` syntax
+  reference environment variables using `$VAR_NAME` or `${VAR_NAME}` syntax (all
+  platforms), or `%VAR_NAME%` (Windows only).
 - **`cwd`** (string): Working directory for Stdio transport
 - **`timeout`** (number): Request timeout in milliseconds (default: 600,000ms =
   10 minutes)
@@ -184,6 +185,63 @@ Each server configuration supports the following properties:
   Service Account to impersonate. Used with
   `authProviderType: 'service_account_impersonation'`.
 
+### Environment variable expansion
+
+Gemini CLI automatically expands environment variables in the `env` block of
+your MCP server configuration. This allows you to securely reference variables
+defined in your shell or environment without hardcoding sensitive information
+directly in your `settings.json` file.
+
+The expansion utility supports:
+
+- **POSIX/Bash syntax:** `$VARIABLE_NAME` or `${VARIABLE_NAME}` (supported on
+  all platforms)
+- **Windows syntax:** `%VARIABLE_NAME%` (supported only when running on Windows)
+
+If a variable is not defined in the current environment, it resolves to an empty
+string.
+
+**Example:**
+
+```json
+"env": {
+  "API_KEY": "$MY_EXTERNAL_TOKEN",
+  "LOG_LEVEL": "$LOG_LEVEL",
+  "TEMP_DIR": "%TEMP%"
+}
+```
+
+### Security and environment sanitization
+
+To protect your credentials, Gemini CLI performs environment sanitization when
+spawning MCP server processes.
+
+#### Automatic redaction
+
+By default, the CLI redacts sensitive environment variables from the base
+environment (inherited from the host process) to prevent unintended exposure to
+third-party MCP servers. This includes:
+
+- Core project keys: `GEMINI_API_KEY`, `GOOGLE_API_KEY`, etc.
+- Variables matching sensitive patterns: `*TOKEN*`, `*SECRET*`, `*PASSWORD*`,
+  `*KEY*`, `*AUTH*`, `*CREDENTIAL*`.
+- Certificates and private key patterns.
+
+#### Explicit overrides
+
+If an environment variable must be passed to an MCP server, you must explicitly
+state it in the `env` property of the server configuration in `settings.json`.
+Explicitly defined variables (including those from extensions) are trusted and
+are **not** subjected to the automatic redaction process.
+
+This follows the security principle that if a variable is explicitly configured
+by the user for a specific server, it constitutes informed consent to share that
+specific data with that server.
+
+> **Note:** Even when explicitly defined, you should avoid hardcoding secrets.
+> Instead, use environment variable expansion (e.g., `"MY_KEY": "$MY_KEY"`) to
+> securely pull the value from your host environment at runtime.
+
 ### OAuth support for remote MCP servers
 
 The Gemini CLI supports OAuth 2.0 authentication for remote MCP servers using
@@ -738,7 +796,9 @@ The MCP integration tracks several states:
 - **Trust settings:** The `trust` option bypasses all confirmation dialogs. Use
   cautiously and only for servers you completely control
 - **Access tokens:** Be security-aware when configuring environment variables
-  containing API keys or tokens
+  containing API keys or tokens. See
+  [Security and environment sanitization](#security-and-environment-sanitization)
+  for details on how Gemini CLI protects your credentials.
 - **Sandbox compatibility:** When using sandboxing, ensure MCP servers are
   available within the sandbox environment
 - **Private data:** Using broadly scoped personal access tokens can lead to

docs/tools/planning.md

@@ -11,6 +11,8 @@ by the agent when you ask it to "start a plan" using natural language. In this
 mode, the agent is restricted to read-only tools to allow for safe exploration
 and planning.
 
+> **Note:** This tool is not available when the CLI is in YOLO mode.
+
 - **Tool name:** `enter_plan_mode`
 - **Display name:** Enter Plan Mode
 - **File:** `enter-plan-mode.ts`

docs/tools/shell.md

@@ -131,9 +131,9 @@ configuration file.
   commands. Including the generic `run_shell_command` acts as a wildcard,
   allowing any command not explicitly blocked.
 - `tools.exclude` [DEPRECATED]: To block specific commands, use the
-  [Policy Engine](../core/policy-engine.md). Historically, this setting allowed
-  adding entries to the `exclude` list under the `tools` category in the format
-  `run_shell_command(<command>)`. For example,
+  [Policy Engine](../reference/policy-engine.md). Historically, this setting
+  allowed adding entries to the `exclude` list under the `tools` category in the
+  format `run_shell_command(<command>)`. For example,
   `"tools": {"exclude": ["run_shell_command(rm)"]}` will block `rm` commands.
 
 The validation logic is designed to be secure and flexible:

esbuild.config.js

@@ -75,10 +75,14 @@ const baseConfig = {
   write: true,
 };
 
+const commonAliases = {
+  punycode: 'punycode/',
+};
+
 const cliConfig = {
   ...baseConfig,
   banner: {
-    js: `import { createRequire } from 'module'; const require = createRequire(import.meta.url); globalThis.__filename = require('url').fileURLToPath(import.meta.url); globalThis.__dirname = require('path').dirname(globalThis.__filename);`,
+    js: `const require = (await import('node:module')).createRequire(import.meta.url); globalThis.__filename = (await import('node:url')).fileURLToPath(import.meta.url); globalThis.__dirname = (await import('node:path')).dirname(globalThis.__filename);`,
   },
   entryPoints: ['packages/cli/index.ts'],
   outfile: 'bundle/gemini.js',
@@ -88,6 +92,7 @@ const cliConfig = {
   plugins: createWasmPlugins(),
   alias: {
     'is-in-ci': path.resolve(__dirname, 'packages/cli/src/patches/is-in-ci.ts'),
+    ...commonAliases,
   },
   metafile: true,
 };
@@ -95,7 +100,7 @@ const cliConfig = {
 const a2aServerConfig = {
   ...baseConfig,
   banner: {
-    js: `const require = (await import('module')).createRequire(import.meta.url); globalThis.__filename = require('url').fileURLToPath(import.meta.url); globalThis.__dirname = require('path').dirname(globalThis.__filename);`,
+    js: `const require = (await import('node:module')).createRequire(import.meta.url); globalThis.__filename = (await import('node:url')).fileURLToPath(import.meta.url); globalThis.__dirname = (await import('node:path')).dirname(globalThis.__filename);`,
   },
   entryPoints: ['packages/a2a-server/src/http/server.ts'],
   outfile: 'packages/a2a-server/dist/a2a-server.mjs',
@@ -103,6 +108,7 @@ const a2aServerConfig = {
     'process.env.CLI_VERSION': JSON.stringify(pkg.version),
   },
   plugins: createWasmPlugins(),
+  alias: commonAliases,
 };
 
 Promise.allSettled([

eslint.config.js

@@ -38,6 +38,7 @@ export default tseslint.config(
       'dist/**',
       'evals/**',
       'packages/test-utils/**',
+      '.gemini/skills/**',
     ],
   },
   eslint.configs.recommended,
@@ -55,7 +56,7 @@ export default tseslint.config(
   },
   {
     // Import specific config
-    files: ['packages/cli/src/**/*.{ts,tsx}'], // Target only TS/TSX in the cli package
+    files: ['packages/*/src/**/*.{ts,tsx}'], // Target all TS/TSX in the packages
     plugins: {
       import: importPlugin,
     },
@@ -127,17 +128,7 @@ export default tseslint.config(
       ],
       // Prevent async errors from bypassing catch handlers
       '@typescript-eslint/return-await': ['error', 'in-try-catch'],
-      'import/no-internal-modules': [
-        'error',
-        {
-          allow: [
-            'react-dom/test-utils',
-            'memfs/lib/volume.js',
-            'yargs/**',
-            'msw/node',
-          ],
-        },
-      ],
+      'import/no-internal-modules': 'off',
       'import/no-relative-packages': 'error',
       'no-cond-assign': 'error',
       'no-debugger': 'error',
@@ -199,6 +190,8 @@ export default tseslint.config(
     ignores: ['**/*.test.ts', '**/*.test.tsx'],
     rules: {
       '@typescript-eslint/no-unsafe-type-assertion': 'error',
+      '@typescript-eslint/no-unsafe-assignment': 'error',
+      '@typescript-eslint/no-unsafe-return': 'error',
     },
   },
   {

evals/frugalReads.eval.ts

@@ -78,22 +78,23 @@ describe('Frugal reads eval', () => {
       ).toBe(true);
 
       let totalLinesRead = 0;
-      const readRanges: { offset: number; limit: number }[] = [];
+      const readRanges: { start_line: number; end_line: number }[] = [];
 
       for (const call of targetFileReads) {
         const args = JSON.parse(call.toolRequest.args);
 
         expect(
-          args.limit,
-          'Agent read the entire file (missing limit) instead of using ranged read',
+          args.end_line,
+          'Agent read the entire file (missing end_line) instead of using ranged read',
         ).toBeDefined();
 
-        const limit = args.limit;
-        const offset = args.offset ?? 0;
-        totalLinesRead += limit;
-        readRanges.push({ offset, limit });
+        const end_line = args.end_line;
+        const start_line = args.start_line ?? 1;
+        const linesRead = end_line - start_line + 1;
+        totalLinesRead += linesRead;
+        readRanges.push({ start_line, end_line });
 
-        expect(args.limit, 'Agent read too many lines at once').toBeLessThan(
+        expect(linesRead, 'Agent read too many lines at once').toBeLessThan(
           1001,
         );
       }
@@ -108,7 +109,7 @@ describe('Frugal reads eval', () => {
       const errorLines = [500, 510, 520];
       for (const line of errorLines) {
         const covered = readRanges.some(
-          (range) => line >= range.offset && line < range.offset + range.limit,
+          (range) => line >= range.start_line && line <= range.end_line,
         );
         expect(covered, `Agent should have read around line ${line}`).toBe(
           true,
@@ -191,8 +192,8 @@ describe('Frugal reads eval', () => {
       for (const call of targetFileReads) {
         const args = JSON.parse(call.toolRequest.args);
         expect(
-          args.limit,
-          'Agent should have used ranged read (limit) to save tokens',
+          args.end_line,
+          'Agent should have used ranged read (end_line) to save tokens',
         ).toBeDefined();
       }
     },
@@ -253,7 +254,7 @@ describe('Frugal reads eval', () => {
       // and just read the whole file to be efficient with tool calls.
       const readEntireFile = targetFileReads.some((call) => {
         const args = JSON.parse(call.toolRequest.args);
-        return args.limit === undefined;
+        return args.end_line === undefined;
       });
 
       expect(

evals/frugalSearch.eval.ts

@@ -68,7 +68,7 @@ describe('Frugal Search', () => {
         const args = getParams(call);
         return (
           args.file_path === 'src/legacy_processor.ts' &&
-          (args.limit === undefined || args.limit === null)
+          (args.end_line === undefined || args.end_line === null)
         );
       });
 
@@ -87,7 +87,7 @@ describe('Frugal Search', () => {
         if (
           call.toolRequest.name === 'read_file' &&
           args.file_path === 'src/legacy_processor.ts' &&
-          args.limit !== undefined
+          args.end_line !== undefined
         ) {
           return true;
         }

evals/grep_search_functionality.eval.ts

@@ -0,0 +1,170 @@
+/**
+ * @license
+ * Copyright 202 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, expect } from 'vitest';
+import { evalTest, TestRig } from './test-helper.js';
+import {
+  assertModelHasOutput,
+  checkModelOutputContent,
+} from './test-helper.js';
+
+describe('grep_search_functionality', () => {
+  const TEST_PREFIX = 'Grep Search Functionality: ';
+
+  evalTest('USUALLY_PASSES', {
+    name: 'should find a simple string in a file',
+    files: {
+      'test.txt': `hello
+    world
+    hello world`,
+    },
+    prompt: 'Find "world" in test.txt',
+    assert: async (rig: TestRig, result: string) => {
+      await rig.waitForToolCall('grep_search');
+      assertModelHasOutput(result);
+      checkModelOutputContent(result, {
+        expectedContent: [/L2: world/, /L3: hello world/],
+        testName: `${TEST_PREFIX}simple search`,
+      });
+    },
+  });
+
+  evalTest('USUALLY_PASSES', {
+    name: 'should perform a case-sensitive search',
+    files: {
+      'test.txt': `Hello
+    hello`,
+    },
+    prompt: 'Find "Hello" in test.txt, case-sensitively.',
+    assert: async (rig: TestRig, result: string) => {
+      const wasToolCalled = await rig.waitForToolCall(
+        'grep_search',
+        undefined,
+        (args) => {
+          const params = JSON.parse(args);
+          return params.case_sensitive === true;
+        },
+      );
+      expect(
+        wasToolCalled,
+        'Expected grep_search to be called with case_sensitive: true',
+      ).toBe(true);
+
+      assertModelHasOutput(result);
+      checkModelOutputContent(result, {
+        expectedContent: [/L1: Hello/],
+        forbiddenContent: [/L2: hello/],
+        testName: `${TEST_PREFIX}case-sensitive search`,
+      });
+    },
+  });
+
+  evalTest('USUALLY_PASSES', {
+    name: 'should return only file names when names_only is used',
+    files: {
+      'file1.txt': 'match me',
+      'file2.txt': 'match me',
+    },
+    prompt: 'Find the files containing "match me".',
+    assert: async (rig: TestRig, result: string) => {
+      const wasToolCalled = await rig.waitForToolCall(
+        'grep_search',
+        undefined,
+        (args) => {
+          const params = JSON.parse(args);
+          return params.names_only === true;
+        },
+      );
+      expect(
+        wasToolCalled,
+        'Expected grep_search to be called with names_only: true',
+      ).toBe(true);
+
+      assertModelHasOutput(result);
+      checkModelOutputContent(result, {
+        expectedContent: [/file1.txt/, /file2.txt/],
+        forbiddenContent: [/L1:/],
+        testName: `${TEST_PREFIX}names_only search`,
+      });
+    },
+  });
+
+  evalTest('USUALLY_PASSES', {
+    name: 'should search only within the specified include glob',
+    files: {
+      'file.js': 'my_function();',
+      'file.ts': 'my_function();',
+    },
+    prompt: 'Find "my_function" in .js files.',
+    assert: async (rig: TestRig, result: string) => {
+      const wasToolCalled = await rig.waitForToolCall(
+        'grep_search',
+        undefined,
+        (args) => {
+          const params = JSON.parse(args);
+          return params.include === '*.js';
+        },
+      );
+      expect(
+        wasToolCalled,
+        'Expected grep_search to be called with include: "*.js"',
+      ).toBe(true);
+
+      assertModelHasOutput(result);
+      checkModelOutputContent(result, {
+        expectedContent: [/file.js/],
+        forbiddenContent: [/file.ts/],
+        testName: `${TEST_PREFIX}include glob search`,
+      });
+    },
+  });
+
+  evalTest('USUALLY_PASSES', {
+    name: 'should search within a specific subdirectory',
+    files: {
+      'src/main.js': 'unique_string_1',
+      'lib/main.js': 'unique_string_2',
+    },
+    prompt: 'Find "unique_string" in the src directory.',
+    assert: async (rig: TestRig, result: string) => {
+      const wasToolCalled = await rig.waitForToolCall(
+        'grep_search',
+        undefined,
+        (args) => {
+          const params = JSON.parse(args);
+          return params.dir_path === 'src';
+        },
+      );
+      expect(
+        wasToolCalled,
+        'Expected grep_search to be called with dir_path: "src"',
+      ).toBe(true);
+
+      assertModelHasOutput(result);
+      checkModelOutputContent(result, {
+        expectedContent: [/unique_string_1/],
+        forbiddenContent: [/unique_string_2/],
+        testName: `${TEST_PREFIX}subdirectory search`,
+      });
+    },
+  });
+
+  evalTest('USUALLY_PASSES', {
+    name: 'should report no matches correctly',
+    files: {
+      'file.txt': 'nothing to see here',
+    },
+    prompt: 'Find "nonexistent" in file.txt',
+    assert: async (rig: TestRig, result: string) => {
+      await rig.waitForToolCall('grep_search');
+      assertModelHasOutput(result);
+      checkModelOutputContent(result, {
+        expectedContent: [/No matches found/],
+        testName: `${TEST_PREFIX}no matches`,
+      });
+    },
+  });
+});

evals/interactive-hang.eval.ts

@@ -56,7 +56,7 @@ describe('interactive_commands', () => {
       const scaffoldCall = logs.find(
         (l) =>
           l.toolRequest.name === 'run_shell_command' &&
-          /npm (init|create)|npx create-|yarn create|pnpm create/.test(
+          /npm (init|create)|npx (.*)?create-|yarn create|pnpm create/.test(
             l.toolRequest.args,
           ),
       );

integration-tests/acp-env-auth.test.ts

@@ -26,7 +26,7 @@ class MockClient implements acp.Client {
   };
 }
 
-describe('ACP Environment and Auth', () => {
+describe.skip('ACP Environment and Auth', () => {
   let rig: TestRig;
   let child: ChildProcess | undefined;
 

integration-tests/concurrency-limit.responses

@@ -0,0 +1,12 @@
+{"method":"generateContentStream","response":[{"candidates":[{"content":{"parts":[{"functionCall":{"name":"web_fetch","args":{"prompt":"fetch https://example.com/1"}}},{"functionCall":{"name":"web_fetch","args":{"prompt":"fetch https://example.com/2"}}},{"functionCall":{"name":"web_fetch","args":{"prompt":"fetch https://example.com/3"}}},{"functionCall":{"name":"web_fetch","args":{"prompt":"fetch https://example.com/4"}}},{"functionCall":{"name":"web_fetch","args":{"prompt":"fetch https://example.com/5"}}},{"functionCall":{"name":"web_fetch","args":{"prompt":"fetch https://example.com/6"}}},{"functionCall":{"name":"web_fetch","args":{"prompt":"fetch https://example.com/7"}}},{"functionCall":{"name":"web_fetch","args":{"prompt":"fetch https://example.com/8"}}},{"functionCall":{"name":"web_fetch","args":{"prompt":"fetch https://example.com/9"}}},{"functionCall":{"name":"web_fetch","args":{"prompt":"fetch https://example.com/10"}}},{"functionCall":{"name":"web_fetch","args":{"prompt":"fetch https://example.com/11"}}}],"role":"model"},"finishReason":"STOP","index":0}],"usageMetadata":{"promptTokenCount":100,"candidatesTokenCount":500,"totalTokenCount":600}}]}
+{"method":"generateContent","response":{"candidates":[{"content":{"parts":[{"text":"Page 1 content"}],"role":"model"},"finishReason":"STOP","index":0}]}}
+{"method":"generateContent","response":{"candidates":[{"content":{"parts":[{"text":"Page 2 content"}],"role":"model"},"finishReason":"STOP","index":0}]}}
+{"method":"generateContent","response":{"candidates":[{"content":{"parts":[{"text":"Page 3 content"}],"role":"model"},"finishReason":"STOP","index":0}]}}
+{"method":"generateContent","response":{"candidates":[{"content":{"parts":[{"text":"Page 4 content"}],"role":"model"},"finishReason":"STOP","index":0}]}}
+{"method":"generateContent","response":{"candidates":[{"content":{"parts":[{"text":"Page 5 content"}],"role":"model"},"finishReason":"STOP","index":0}]}}
+{"method":"generateContent","response":{"candidates":[{"content":{"parts":[{"text":"Page 6 content"}],"role":"model"},"finishReason":"STOP","index":0}]}}
+{"method":"generateContent","response":{"candidates":[{"content":{"parts":[{"text":"Page 7 content"}],"role":"model"},"finishReason":"STOP","index":0}]}}
+{"method":"generateContent","response":{"candidates":[{"content":{"parts":[{"text":"Page 8 content"}],"role":"model"},"finishReason":"STOP","index":0}]}}
+{"method":"generateContent","response":{"candidates":[{"content":{"parts":[{"text":"Page 9 content"}],"role":"model"},"finishReason":"STOP","index":0}]}}
+{"method":"generateContent","response":{"candidates":[{"content":{"parts":[{"text":"Page 10 content"}],"role":"model"},"finishReason":"STOP","index":0}]}}
+{"method":"generateContentStream","response":[{"candidates":[{"content":{"parts":[{"text":"Some requests were rate limited: Rate limit exceeded for host. Please wait 60 seconds before trying again."}],"role":"model"},"finishReason":"STOP","index":0}],"usageMetadata":{"promptTokenCount":1000,"candidatesTokenCount":50,"totalTokenCount":1050}}]}

integration-tests/concurrency-limit.test.ts

@@ -0,0 +1,48 @@
+/**
+ * @license
+ * Copyright 2026 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect, beforeEach, afterEach } from 'vitest';
+import { TestRig } from './test-helper.js';
+import { join } from 'node:path';
+
+describe('web-fetch rate limiting', () => {
+  let rig: TestRig;
+
+  beforeEach(() => {
+    rig = new TestRig();
+  });
+
+  afterEach(async () => {
+    if (rig) {
+      await rig.cleanup();
+    }
+  });
+
+  it('should rate limit multiple requests to the same host', async () => {
+    rig.setup('web-fetch rate limit', {
+      settings: { tools: { core: ['web_fetch'] } },
+      fakeResponsesPath: join(
+        import.meta.dirname,
+        'concurrency-limit.responses',
+      ),
+    });
+
+    const result = await rig.run({
+      args: `Fetch 11 pages from example.com`,
+    });
+
+    // We expect to find at least one tool call that failed with a rate limit error.
+    const toolLogs = rig.readToolLogs();
+    const rateLimitedCalls = toolLogs.filter(
+      (log) =>
+        log.toolRequest.name === 'web_fetch' &&
+        log.toolRequest.error?.includes('Rate limit exceeded'),
+    );
+
+    expect(rateLimitedCalls.length).toBeGreaterThan(0);
+    expect(result).toContain('Rate limit exceeded');
+  });
+});

integration-tests/hooks-system.tail-tool-call.responses

@@ -0,0 +1,2 @@
+{"method":"generateContentStream","response":[{"candidates":[{"content":{"parts":[{"functionCall":{"name":"read_file","args":{"file_path":"original.txt"}}}],"role":"model"},"finishReason":"STOP","index":0}]}]}
+{"method":"generateContentStream","response":[{"candidates":[{"content":{"parts":[{"text":"Tail call completed successfully."}],"role":"model"},"finishReason":"STOP","index":0}]}]}

integration-tests/hooks-system.test.ts

@@ -286,6 +286,113 @@ describe('Hooks System Integration', () => {
     });
   });
 
+  describe('Command Hooks - Tail Tool Calls', () => {
+    it('should execute a tail tool call from AfterTool hooks and replace original response', async () => {
+      // Create a script that acts as the hook.
+      // It will trigger on "read_file" and issue a tail call to "write_file".
+      rig.setup('should execute a tail tool call from AfterTool hooks', {
+        fakeResponsesPath: join(
+          import.meta.dirname,
+          'hooks-system.tail-tool-call.responses',
+        ),
+      });
+
+      const hookOutput = {
+        decision: 'allow',
+        hookSpecificOutput: {
+          hookEventName: 'AfterTool',
+          tailToolCallRequest: {
+            name: 'write_file',
+            args: {
+              file_path: 'tail-called-file.txt',
+              content: 'Content from tail call',
+            },
+          },
+        },
+      };
+
+      const hookScript = `console.log(JSON.stringify(${JSON.stringify(
+        hookOutput,
+      )})); process.exit(0);`;
+
+      const scriptPath = join(rig.testDir!, 'tail_call_hook.js');
+      writeFileSync(scriptPath, hookScript);
+      const commandPath = scriptPath.replace(/\\/g, '/');
+
+      rig.setup('should execute a tail tool call from AfterTool hooks', {
+        fakeResponsesPath: join(
+          import.meta.dirname,
+          'hooks-system.tail-tool-call.responses',
+        ),
+        settings: {
+          hooksConfig: {
+            enabled: true,
+          },
+          hooks: {
+            AfterTool: [
+              {
+                matcher: 'read_file',
+                hooks: [
+                  {
+                    type: 'command',
+                    command: `node "${commandPath}"`,
+                    timeout: 5000,
+                  },
+                ],
+              },
+            ],
+          },
+        },
+      });
+
+      // Create a test file to trigger the read_file tool
+      rig.createFile('original.txt', 'Original content');
+
+      const cliOutput = await rig.run({
+        args: 'Read original.txt', // Fake responses should trigger read_file on this
+      });
+
+      // 1. Verify that write_file was called (as a tail call replacing read_file)
+      // Since read_file was replaced before finalizing, it will not appear in the tool logs.
+      const foundWriteFile = await rig.waitForToolCall('write_file');
+      expect(foundWriteFile).toBeTruthy();
+
+      // Ensure hook logs are flushed and the final LLM response is received.
+      // The mock LLM is configured to respond with "Tail call completed successfully."
+      expect(cliOutput).toContain('Tail call completed successfully.');
+
+      // Ensure telemetry is written to disk
+      await rig.waitForTelemetryReady();
+
+      // Read hook logs to debug
+      const hookLogs = rig.readHookLogs();
+      const relevantHookLog = hookLogs.find(
+        (l) => l.hookCall.hook_event_name === 'AfterTool',
+      );
+
+      expect(relevantHookLog).toBeDefined();
+
+      // 2. Verify write_file was executed.
+      // In non-interactive mode, the CLI deduplicates tool execution logs by callId.
+      // Since a tail call reuses the original callId, "Tool: write_file" is not printed.
+      // Instead, we verify the side-effect (file creation) and the telemetry log.
+
+      // 3. Verify the tail-called tool actually wrote the file
+      const modifiedContent = rig.readFile('tail-called-file.txt');
+      expect(modifiedContent).toBe('Content from tail call');
+
+      // 4. Verify telemetry for the final tool call.
+      // The original 'read_file' call is replaced, so only 'write_file' is finalized and logged.
+      const toolLogs = rig.readToolLogs();
+      const successfulTools = toolLogs.filter((t) => t.toolRequest.success);
+      expect(
+        successfulTools.some((t) => t.toolRequest.name === 'write_file'),
+      ).toBeTruthy();
+      // The original request name should be preserved in the log payload if possible,
+      // but the executed tool name is 'write_file'.
+    });
+  });
+
   describe('BeforeModel Hooks - LLM Request Modification', () => {
     it('should modify LLM requests with BeforeModel hooks', async () => {
       // Create a hook script that replaces the LLM request with a modified version

integration-tests/parallel-tools.responses

@@ -0,0 +1 @@
+{"method":"generateContentStream","response":[{"candidates":[{"content":{"parts":[{"functionCall":{"name":"read_file","args":{"file_path":"file1.txt"}}},{"functionCall":{"name":"read_file","args":{"file_path":"file2.txt"}}},{"functionCall":{"name":"write_file","args":{"file_path":"output.txt","content":"wave2"}}},{"functionCall":{"name":"read_file","args":{"file_path":"file3.txt"}}},{"functionCall":{"name":"read_file","args":{"file_path":"file4.txt"}}}, {"text":"All waves completed successfully."}]},"finishReason":"STOP","index":0}]}]}

integration-tests/parallel-tools.test.ts

@@ -0,0 +1,77 @@
+/**
+ * @license
+ * Copyright 2026 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect, beforeEach, afterEach } from 'vitest';
+import { TestRig } from './test-helper.js';
+import { join } from 'node:path';
+import fs from 'node:fs';
+
+describe('Parallel Tool Execution Integration', () => {
+  let rig: TestRig;
+
+  beforeEach(() => {
+    rig = new TestRig();
+  });
+
+  afterEach(async () => {
+    await rig.cleanup();
+  });
+
+  it('should execute [read, read, write, read, read] in correct waves with user approval', async () => {
+    rig.setup('parallel-wave-execution', {
+      fakeResponsesPath: join(import.meta.dirname, 'parallel-tools.responses'),
+      settings: {
+        tools: {
+          core: ['read_file', 'write_file'],
+          approval: 'ASK', // Disable YOLO mode to show permission prompts
+          confirmationRequired: ['write_file'],
+        },
+      },
+    });
+
+    rig.createFile('file1.txt', 'c1');
+    rig.createFile('file2.txt', 'c2');
+    rig.createFile('file3.txt', 'c3');
+    rig.createFile('file4.txt', 'c4');
+    rig.sync();
+
+    const run = await rig.runInteractive({ approvalMode: 'default' });
+
+    // 1. Trigger the wave
+    await run.type('ok');
+    await run.type('\r');
+
+    // 3. Wait for the write_file prompt.
+    await run.expectText('Allow', 5000);
+
+    // 4. Press Enter to approve the write_file.
+    await run.type('y');
+    await run.type('\r');
+
+    // 5. Wait for the final model response
+    await run.expectText('All waves completed successfully.', 5000);
+
+    // Verify all tool calls were made and succeeded in the logs
+    await rig.expectToolCallSuccess(['write_file']);
+    const toolLogs = rig.readToolLogs();
+
+    const readFiles = toolLogs.filter(
+      (l) => l.toolRequest.name === 'read_file',
+    );
+    const writeFiles = toolLogs.filter(
+      (l) => l.toolRequest.name === 'write_file',
+    );
+
+    expect(readFiles.length).toBe(4);
+    expect(writeFiles.length).toBe(1);
+    expect(toolLogs.every((l) => l.toolRequest.success)).toBe(true);
+
+    // Check that output.txt was actually written
+    expect(fs.readFileSync(join(rig.testDir!, 'output.txt'), 'utf8')).toBe(
+      'wave2',
+    );
+  });
+});

integration-tests/plan-mode.test.ts

@@ -0,0 +1,143 @@
+/**
+ * @license
+ * Copyright 2026 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect, beforeEach, afterEach } from 'vitest';
+import { TestRig, checkModelOutputContent } from './test-helper.js';
+
+describe('Plan Mode', () => {
+  let rig: TestRig;
+
+  beforeEach(() => {
+    rig = new TestRig();
+  });
+
+  afterEach(async () => await rig.cleanup());
+
+  it('should allow read-only tools but deny write tools in plan mode', async () => {
+    await rig.setup(
+      'should allow read-only tools but deny write tools in plan mode',
+      {
+        settings: {
+          experimental: { plan: true },
+          tools: {
+            core: [
+              'run_shell_command',
+              'list_directory',
+              'write_file',
+              'read_file',
+            ],
+          },
+        },
+      },
+    );
+
+    // We use a prompt that asks for both a read-only action and a write action.
+    // "List files" (read-only) followed by "touch denied.txt" (write).
+    const result = await rig.run({
+      approvalMode: 'plan',
+      stdin:
+        'Please list the files in the current directory, and then attempt to create a new file named "denied.txt" using a shell command.',
+    });
+
+    const lsCallFound = await rig.waitForToolCall('list_directory');
+    expect(lsCallFound, 'Expected list_directory to be called').toBe(true);
+
+    const shellCallFound = await rig.waitForToolCall('run_shell_command');
+    expect(shellCallFound, 'Expected run_shell_command to fail').toBe(false);
+
+    const toolLogs = rig.readToolLogs();
+    const lsLog = toolLogs.find((l) => l.toolRequest.name === 'list_directory');
+    expect(
+      toolLogs.find((l) => l.toolRequest.name === 'run_shell_command'),
+    ).toBeUndefined();
+
+    expect(lsLog?.toolRequest.success).toBe(true);
+
+    checkModelOutputContent(result, {
+      expectedContent: ['Plan Mode', 'read-only'],
+      testName: 'Plan Mode restrictions test',
+    });
+  });
+
+  it('should allow write_file only in the plans directory in plan mode', async () => {
+    await rig.setup(
+      'should allow write_file only in the plans directory in plan mode',
+      {
+        settings: {
+          experimental: { plan: true },
+          tools: {
+            core: ['write_file', 'read_file', 'list_directory'],
+            allowed: ['write_file'],
+          },
+          general: { defaultApprovalMode: 'plan' },
+        },
+      },
+    );
+
+    // We ask the agent to create a plan for a feature, which should trigger a write_file in the plans directory.
+    // Verify that write_file outside of plan directory fails
+    await rig.run({
+      approvalMode: 'plan',
+      stdin:
+        'Create a file called plan.md in the plans directory. Then create a file called hello.txt in the current directory',
+    });
+
+    const toolLogs = rig.readToolLogs();
+    const writeLogs = toolLogs.filter(
+      (l) => l.toolRequest.name === 'write_file',
+    );
+
+    const planWrite = writeLogs.find(
+      (l) =>
+        l.toolRequest.args.includes('plans') &&
+        l.toolRequest.args.includes('plan.md'),
+    );
+
+    const blockedWrite = writeLogs.find((l) =>
+      l.toolRequest.args.includes('hello.txt'),
+    );
+
+    // Model is undeterministic, sometimes a blocked write appears in tool logs and sometimes it doesn't
+    if (blockedWrite) {
+      expect(blockedWrite?.toolRequest.success).toBe(false);
+    }
+
+    expect(planWrite?.toolRequest.success).toBe(true);
+  });
+
+  it('should be able to enter plan mode from default mode', async () => {
+    await rig.setup('should be able to enter plan mode from default mode', {
+      settings: {
+        experimental: { plan: true },
+        tools: {
+          core: ['enter_plan_mode'],
+          allowed: ['enter_plan_mode'],
+        },
+      },
+    });
+
+    // Start in default mode and ask to enter plan mode.
+    await rig.run({
+      approvalMode: 'default',
+      stdin:
+        'I want to perform a complex refactoring. Please enter plan mode so we can design it first.',
+    });
+
+    const enterPlanCallFound = await rig.waitForToolCall(
+      'enter_plan_mode',
+      10000,
+    );
+    expect(enterPlanCallFound, 'Expected enter_plan_mode to be called').toBe(
+      true,
+    );
+
+    const toolLogs = rig.readToolLogs();
+    const enterLog = toolLogs.find(
+      (l) => l.toolRequest.name === 'enter_plan_mode',
+    );
+    expect(enterLog?.toolRequest.success).toBe(true);
+  });
+});

integration-tests/symlink-install.test.ts

@@ -0,0 +1,136 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, expect, it, beforeEach, afterEach } from 'vitest';
+import { TestRig, InteractiveRun } from './test-helper.js';
+import * as fs from 'node:fs';
+import * as os from 'node:os';
+import {
+  writeFileSync,
+  mkdirSync,
+  symlinkSync,
+  readFileSync,
+  unlinkSync,
+} from 'node:fs';
+import { join, dirname } from 'node:path';
+import { GEMINI_DIR } from '@google/gemini-cli-core';
+import * as pty from '@lydell/node-pty';
+import { fileURLToPath } from 'node:url';
+
+const __dirname = dirname(fileURLToPath(import.meta.url));
+const BUNDLE_PATH = join(__dirname, '..', 'bundle/gemini.js');
+
+const extension = `{
+  "name": "test-symlink-extension",
+  "version": "0.0.1"
+}`;
+
+const otherExtension = `{
+  "name": "malicious-extension",
+  "version": "6.6.6"
+}`;
+
+describe('extension symlink install spoofing protection', () => {
+  let rig: TestRig;
+
+  beforeEach(() => {
+    rig = new TestRig();
+  });
+
+  afterEach(async () => await rig.cleanup());
+
+  it('canonicalizes the trust path and prevents symlink spoofing', async () => {
+    // Enable folder trust for this test
+    rig.setup('symlink spoofing test', {
+      settings: {
+        security: {
+          folderTrust: {
+            enabled: true,
+          },
+        },
+      },
+    });
+
+    const realExtPath = join(rig.testDir!, 'real-extension');
+    mkdirSync(realExtPath);
+    writeFileSync(join(realExtPath, 'gemini-extension.json'), extension);
+
+    const maliciousExtPath = join(
+      os.tmpdir(),
+      `malicious-extension-${Date.now()}`,
+    );
+    mkdirSync(maliciousExtPath);
+    writeFileSync(
+      join(maliciousExtPath, 'gemini-extension.json'),
+      otherExtension,
+    );
+
+    const symlinkPath = join(rig.testDir!, 'symlink-extension');
+    symlinkSync(realExtPath, symlinkPath);
+
+    // Function to run a command with a PTY to avoid headless mode
+    const runPty = (args: string[]) => {
+      const ptyProcess = pty.spawn(process.execPath, [BUNDLE_PATH, ...args], {
+        name: 'xterm-color',
+        cols: 80,
+        rows: 80,
+        cwd: rig.testDir!,
+        env: {
+          ...process.env,
+          GEMINI_CLI_HOME: rig.homeDir!,
+          GEMINI_CLI_INTEGRATION_TEST: 'true',
+          GEMINI_PTY_INFO: 'node-pty',
+        },
+      });
+      return new InteractiveRun(ptyProcess);
+    };
+
+    // 1. Install via symlink, trust it
+    const run1 = runPty(['extensions', 'install', symlinkPath]);
+    await run1.expectText('Do you want to trust this folder', 30000);
+    await run1.type('y\r');
+    await run1.expectText('trust this workspace', 30000);
+    await run1.type('y\r');
+    await run1.expectText('Do you want to continue', 30000);
+    await run1.type('y\r');
+    await run1.expectText('installed successfully', 30000);
+    await run1.kill();
+
+    // 2. Verify trustedFolders.json contains the REAL path, not the symlink path
+    const trustedFoldersPath = join(
+      rig.homeDir!,
+      GEMINI_DIR,
+      'trustedFolders.json',
+    );
+    // Wait for file to be written
+    let attempts = 0;
+    while (!fs.existsSync(trustedFoldersPath) && attempts < 50) {
+      await new Promise((resolve) => setTimeout(resolve, 100));
+      attempts++;
+    }
+
+    const trustedFolders = JSON.parse(
+      readFileSync(trustedFoldersPath, 'utf-8'),
+    );
+    const trustedPaths = Object.keys(trustedFolders);
+    const canonicalRealExtPath = fs.realpathSync(realExtPath);
+
+    expect(trustedPaths).toContain(canonicalRealExtPath);
+    expect(trustedPaths).not.toContain(symlinkPath);
+
+    // 3. Swap the symlink to point to the malicious extension
+    unlinkSync(symlinkPath);
+    symlinkSync(maliciousExtPath, symlinkPath);
+
+    // 4. Try to install again via the same symlink path.
+    // It should NOT be trusted because the real path changed.
+    const run2 = runPty(['extensions', 'install', symlinkPath]);
+    await run2.expectText('Do you want to trust this folder', 30000);
+    await run2.type('n\r');
+    await run2.expectText('Installation aborted', 30000);
+    await run2.kill();
+  }, 60000);
+});

package.json

@@ -64,11 +64,16 @@
     "pre-commit": "node scripts/pre-commit.js"
   },
   "overrides": {
-    "ink": "npm:@jrichman/ink@6.4.10",
+    "ink": "npm:@jrichman/ink@6.4.11",
     "wrap-ansi": "9.0.2",
     "cliui": {
       "wrap-ansi": "7.0.0"
-    }
+    },
+    "glob": "^12.0.0",
+    "node-domexception": "npm:empty@^0.10.1",
+    "prebuild-install": "npm:nop@1.0.0",
+    "cross-spawn": "^7.0.6",
+    "minimatch": "^10.2.2"
   },
   "bin": {
     "gemini": "bundle/gemini.js"
@@ -95,19 +100,19 @@
     "@vitest/eslint-plugin": "^1.3.4",
     "cross-env": "^7.0.3",
     "depcheck": "^1.4.7",
+    "domexception": "^4.0.0",
     "esbuild": "^0.25.0",
     "esbuild-plugin-wasm": "^1.1.0",
     "eslint": "^9.24.0",
     "eslint-config-prettier": "^10.1.2",
     "eslint-plugin-headers": "^1.3.3",
-    "eslint-plugin-import": "^2.31.0",
+    "eslint-plugin-import": "^2.32.0",
     "eslint-plugin-react": "^7.37.5",
     "eslint-plugin-react-hooks": "^5.2.0",
     "glob": "^12.0.0",
     "globals": "^16.0.0",
     "google-artifactregistry-auth": "^3.4.0",
     "husky": "^9.1.7",
-    "ink-testing-library": "^4.0.0",
     "json": "^11.0.0",
     "lint-staged": "^16.1.6",
     "memfs": "^4.42.0",
@@ -127,9 +132,11 @@
     "yargs": "^17.7.2"
   },
   "dependencies": {
-    "ink": "npm:@jrichman/ink@6.4.10",
+    "ink": "npm:@jrichman/ink@6.4.11",
     "latest-version": "^9.0.0",
+    "node-fetch-native": "^1.6.7",
     "proper-lockfile": "^4.1.2",
+    "punycode": "^2.3.1",
     "simple-git": "^3.28.0"
   },
   "optionalDependencies": {

packages/a2a-server/src/agent/executor.ts

@@ -29,6 +29,8 @@ import {
   CoderAgentEvent,
   getPersistedState,
   setPersistedState,
+  getContextIdFromMetadata,
+  getAgentSettingsFromMetadata,
 } from '../types.js';
 import { loadConfig, loadEnvironment, setTargetDir } from '../config/config.js';
 import { loadSettings } from '../config/settings.js';
@@ -117,8 +119,7 @@ export class CoderAgentExecutor implements AgentExecutor {
     const agentSettings = persistedState._agentSettings;
     const config = await this.getConfig(agentSettings, sdkTask.id);
     const contextId: string =
-      // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-      (metadata['_contextId'] as string) || sdkTask.contextId;
+      getContextIdFromMetadata(metadata) || sdkTask.contextId;
     const runtimeTask = await Task.create(
       sdkTask.id,
       contextId,
@@ -141,8 +142,10 @@ export class CoderAgentExecutor implements AgentExecutor {
     agentSettingsInput?: AgentSettings,
     eventBus?: ExecutionEventBus,
   ): Promise<TaskWrapper> {
-    // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-    const agentSettings = agentSettingsInput || ({} as AgentSettings);
+    const agentSettings: AgentSettings = agentSettingsInput || {
+      kind: CoderAgentEvent.StateAgentSettingsEvent,
+      workspacePath: process.cwd(),
+    };
     const config = await this.getConfig(agentSettings, taskId);
     const runtimeTask = await Task.create(
       taskId,
@@ -292,8 +295,7 @@ export class CoderAgentExecutor implements AgentExecutor {
     const contextId: string =
       userMessage.contextId ||
       sdkTask?.contextId ||
-      // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-      (sdkTask?.metadata?.['_contextId'] as string) ||
+      getContextIdFromMetadata(sdkTask?.metadata) ||
       uuidv4();
 
     logger.info(
@@ -388,10 +390,7 @@ export class CoderAgentExecutor implements AgentExecutor {
       }
     } else {
       logger.info(`[CoderAgentExecutor] Creating new task ${taskId}.`);
-      // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-      const agentSettings = userMessage.metadata?.[
-        'coderAgent'
-      ] as AgentSettings;
+      const agentSettings = getAgentSettingsFromMetadata(userMessage.metadata);
       try {
         wrapper = await this.createTask(
           taskId,

packages/a2a-server/src/agent/task.test.ts

@@ -14,19 +14,21 @@ import {
   type Mock,
 } from 'vitest';
 import { Task } from './task.js';
+import type {
+  ToolCall,
+  Config,
+  ToolCallRequestInfo,
+  GitService,
+  CompletedToolCall,
+} from '@google/gemini-cli-core';
 import {
   GeminiEventType,
-  type Config,
-  type ToolCallRequestInfo,
-  type GitService,
-  type CompletedToolCall,
   ApprovalMode,
   ToolConfirmationOutcome,
 } from '@google/gemini-cli-core';
 import { createMockConfig } from '../utils/testing_utils.js';
 import type { ExecutionEventBus, RequestContext } from '@a2a-js/sdk/server';
 import { CoderAgentEvent } from '../types.js';
-import type { ToolCall } from '@google/gemini-cli-core';
 
 const mockProcessRestorableToolCalls = vi.hoisted(() => vi.fn());
 
@@ -511,7 +513,10 @@ describe('Task', () => {
           {
             request: { callId: '1' },
             status: 'awaiting_approval',
-            confirmationDetails: { onConfirm: onConfirmSpy },
+            confirmationDetails: {
+              type: 'edit',
+              onConfirm: onConfirmSpy,
+            },
           },
         ] as unknown as ToolCall[];
 
@@ -531,7 +536,10 @@ describe('Task', () => {
           {
             request: { callId: '1' },
             status: 'awaiting_approval',
-            confirmationDetails: { onConfirm: onConfirmSpy },
+            confirmationDetails: {
+              type: 'edit',
+              onConfirm: onConfirmSpy,
+            },
           },
         ] as unknown as ToolCall[];
 

packages/a2a-server/src/agent/task.ts

@@ -13,6 +13,7 @@ import {
   getAllMCPServerStatuses,
   MCPServerStatus,
   isNodeError,
+  getErrorMessage,
   parseAndFormatApiError,
   safeLiteralReplace,
   DEFAULT_GUI_EDITOR,
@@ -30,8 +31,7 @@ import {
   EDIT_TOOL_NAMES,
   processRestorableToolCalls,
 } from '@google/gemini-cli-core';
-import type { RequestContext } from '@a2a-js/sdk/server';
-import { type ExecutionEventBus } from '@a2a-js/sdk/server';
+import type { RequestContext, ExecutionEventBus } from '@a2a-js/sdk/server';
 import type {
   TaskStatusUpdateEvent,
   TaskArtifactUpdateEvent,
@@ -59,6 +59,33 @@ import type { PartUnion, Part as genAiPart } from '@google/genai';
 
 type UnionKeys<T> = T extends T ? keyof T : never;
 
+type ConfirmationType = ToolCallConfirmationDetails['type'];
+
+const VALID_CONFIRMATION_TYPES: readonly ConfirmationType[] = [
+  'edit',
+  'exec',
+  'mcp',
+  'info',
+  'ask_user',
+  'exit_plan_mode',
+] as const;
+
+function isToolCallConfirmationDetails(
+  value: unknown,
+): value is ToolCallConfirmationDetails {
+  if (
+    typeof value !== 'object' ||
+    value === null ||
+    !('onConfirm' in value) ||
+    typeof value.onConfirm !== 'function' ||
+    !('type' in value) ||
+    typeof value.type !== 'string'
+  ) {
+    return false;
+  }
+  return (VALID_CONFIRMATION_TYPES as readonly string[]).includes(value.type);
+}
+
 export class Task {
   id: string;
   contextId: string;
@@ -376,11 +403,10 @@ export class Task {
       }
 
       if (tc.status === 'awaiting_approval' && tc.confirmationDetails) {
-        this.pendingToolConfirmationDetails.set(
-          tc.request.callId,
-          // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-          tc.confirmationDetails as ToolCallConfirmationDetails,
-        );
+        const details = tc.confirmationDetails;
+        if (isToolCallConfirmationDetails(details)) {
+          this.pendingToolConfirmationDetails.set(tc.request.callId, details);
+        }
       }
 
       // Only send an update if the status has actually changed.
@@ -412,11 +438,12 @@ export class Task {
       );
       toolCalls.forEach((tc: ToolCall) => {
         if (tc.status === 'awaiting_approval' && tc.confirmationDetails) {
-          // eslint-disable-next-line @typescript-eslint/no-floating-promises, @typescript-eslint/no-unsafe-type-assertion
-          (tc.confirmationDetails as ToolCallConfirmationDetails).onConfirm(
-            ToolConfirmationOutcome.ProceedOnce,
-          );
-          this.pendingToolConfirmationDetails.delete(tc.request.callId);
+          const details = tc.confirmationDetails;
+          if (isToolCallConfirmationDetails(details)) {
+            // eslint-disable-next-line @typescript-eslint/no-floating-promises
+            details.onConfirm(ToolConfirmationOutcome.ProceedOnce);
+            this.pendingToolConfirmationDetails.delete(tc.request.callId);
+          }
         }
       });
       return;
@@ -466,15 +493,13 @@ export class Task {
     T extends ToolCall | AnyDeclarativeTool,
     K extends UnionKeys<T>,
   >(from: T, ...fields: K[]): Partial<T> {
-    // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-    const ret = {} as Pick<T, K>;
+    const ret: Partial<T> = {};
     for (const field of fields) {
-      if (field in from) {
+      if (field in from && from[field] !== undefined) {
         ret[field] = from[field];
       }
     }
-    // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-    return ret as Partial<T>;
+    return ret;
   }
 
   private toolStatusMessage(
@@ -485,8 +510,11 @@ export class Task {
     const messageParts: Part[] = [];
 
     // Create a serializable version of the ToolCall (pick necessary
-    // properties/avoid methods causing circular reference errors)
-    const serializableToolCall: Partial<ToolCall> = this._pickFields(
+    // properties/avoid methods causing circular reference errors).
+    // Type allows tool to be Partial<AnyDeclarativeTool> for serialization.
+    const serializableToolCall: Partial<Omit<ToolCall, 'tool'>> & {
+      tool?: Partial<AnyDeclarativeTool>;
+    } = this._pickFields(
       tc,
       'request',
       'status',
@@ -496,8 +524,7 @@ export class Task {
     );
 
     if (tc.tool) {
-      // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-      serializableToolCall.tool = this._pickFields(
+      const toolFields = this._pickFields(
         tc.tool,
         'name',
         'displayName',
@@ -507,7 +534,8 @@ export class Task {
         'canUpdateOutput',
         'schema',
         'parameterSchema',
-      ) as AnyDeclarativeTool;
+      );
+      serializableToolCall.tool = toolFields;
     }
 
     messageParts.push({
@@ -530,8 +558,15 @@ export class Task {
     old_string: string,
     new_string: string,
   ): Promise<string> {
+    // Validate path to prevent path traversal vulnerabilities
+    const resolvedPath = path.resolve(this.config.getTargetDir(), file_path);
+    const pathError = this.config.validatePathAccess(resolvedPath, 'read');
+    if (pathError) {
+      throw new Error(`Path validation failed: ${pathError}`);
+    }
+
     try {
-      const currentContent = await fs.readFile(file_path, 'utf8');
+      const currentContent = await fs.readFile(resolvedPath, 'utf8');
       return this._applyReplacement(
         currentContent,
         old_string,
@@ -625,15 +660,32 @@ export class Task {
           request.args['old_string'] &&
           request.args['new_string']
         ) {
-          const newContent = await this.getProposedContent(
-            // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-            request.args['file_path'] as string,
-            // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-            request.args['old_string'] as string,
-            // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-            request.args['new_string'] as string,
-          );
-          return { ...request, args: { ...request.args, newContent } };
+          const filePath = request.args['file_path'];
+          const oldString = request.args['old_string'];
+          const newString = request.args['new_string'];
+          if (
+            typeof filePath === 'string' &&
+            typeof oldString === 'string' &&
+            typeof newString === 'string'
+          ) {
+            // Resolve and validate path to prevent path traversal (user-controlled file_path).
+            const resolvedPath = path.resolve(
+              this.config.getTargetDir(),
+              filePath,
+            );
+            const pathError = this.config.validatePathAccess(
+              resolvedPath,
+              'read',
+            );
+            if (!pathError) {
+              const newContent = await this.getProposedContent(
+                resolvedPath,
+                oldString,
+                newString,
+              );
+              return { ...request, args: { ...request.args, newContent } };
+            }
+          }
         }
         return request;
       }),
@@ -725,19 +777,27 @@ export class Task {
         break;
       case GeminiEventType.Error:
       default: {
-        // Block scope for lexical declaration
-        // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-        const errorEvent = event as ServerGeminiErrorEvent; // Type assertion
-        const errorMessage =
-          errorEvent.value?.error.message ?? 'Unknown error from LLM stream';
+        // Use type guard instead of unsafe type assertion
+        let errorEvent: ServerGeminiErrorEvent | undefined;
+        if (
+          event.type === GeminiEventType.Error &&
+          event.value &&
+          typeof event.value === 'object' &&
+          'error' in event.value
+        ) {
+          errorEvent = event;
+        }
+        const errorMessage = errorEvent?.value?.error
+          ? getErrorMessage(errorEvent.value.error)
+          : 'Unknown error from LLM stream';
         logger.error(
           '[Task] Received error event from LLM stream:',
           errorMessage,
         );
 
         let errMessage = `Unknown error from LLM stream: ${JSON.stringify(event)}`;
-        if (errorEvent.value) {
-          errMessage = parseAndFormatApiError(errorEvent.value);
+        if (errorEvent?.value?.error) {
+          errMessage = parseAndFormatApiError(errorEvent.value.error);
         }
         this.cancelPendingTools(`LLM stream error: ${errorMessage}`);
         this.setTaskStateAndPublishUpdate(
@@ -813,12 +873,11 @@ export class Task {
 
         // If `edit` tool call, pass updated payload if presesent
         if (confirmationDetails.type === 'edit') {
-          const payload = part.data['newContent']
-            ? ({
-                // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-                newContent: part.data['newContent'] as string,
-              } as ToolConfirmationPayload)
-            : undefined;
+          const newContent = part.data['newContent'];
+          const payload =
+            typeof newContent === 'string'
+              ? ({ newContent } as ToolConfirmationPayload)
+              : undefined;
           this.skipFinalTrueAfterInlineEdit = !!payload;
           try {
             await confirmationDetails.onConfirm(confirmationOutcome, payload);

packages/a2a-server/src/commands/restore.ts

@@ -69,6 +69,7 @@ export class RestoreCommand implements Command {
         throw error;
       }
 
+      // eslint-disable-next-line @typescript-eslint/no-unsafe-assignment
       const toolCallData = JSON.parse(data);
       const ToolCallDataSchema = getToolCallDataSchema();
       const parseResult = ToolCallDataSchema.safeParse(toolCallData);

packages/a2a-server/src/config/config.test.ts

@@ -267,4 +267,47 @@ describe('loadConfig', () => {
       customIgnoreFilePaths: [testPath],
     });
   });
+
+  describe('tool configuration', () => {
+    it('should pass V1 allowedTools to Config properly', async () => {
+      const settings: Settings = {
+        allowedTools: ['shell', 'edit'],
+      };
+      await loadConfig(settings, mockExtensionLoader, taskId);
+      expect(Config).toHaveBeenCalledWith(
+        expect.objectContaining({
+          allowedTools: ['shell', 'edit'],
+        }),
+      );
+    });
+
+    it('should pass V2 tools.allowed to Config properly', async () => {
+      const settings: Settings = {
+        tools: {
+          allowed: ['shell', 'fetch'],
+        },
+      };
+      await loadConfig(settings, mockExtensionLoader, taskId);
+      expect(Config).toHaveBeenCalledWith(
+        expect.objectContaining({
+          allowedTools: ['shell', 'fetch'],
+        }),
+      );
+    });
+
+    it('should prefer V1 allowedTools over V2 tools.allowed if both present', async () => {
+      const settings: Settings = {
+        allowedTools: ['v1-tool'],
+        tools: {
+          allowed: ['v2-tool'],
+        },
+      };
+      await loadConfig(settings, mockExtensionLoader, taskId);
+      expect(Config).toHaveBeenCalledWith(
+        expect.objectContaining({
+          allowedTools: ['v1-tool'],
+        }),
+      );
+    });
+  });
 });

packages/a2a-server/src/config/config.ts

@@ -8,17 +8,19 @@ import * as fs from 'node:fs';
 import * as path from 'node:path';
 import * as dotenv from 'dotenv';
 
-import type { TelemetryTarget } from '@google/gemini-cli-core';
+import type {
+  TelemetryTarget,
+  ConfigParameters,
+  ExtensionLoader,
+} from '@google/gemini-cli-core';
 import {
   AuthType,
   Config,
-  type ConfigParameters,
   FileDiscoveryService,
   ApprovalMode,
   loadServerHierarchicalMemory,
   GEMINI_DIR,
   DEFAULT_GEMINI_EMBEDDING_MODEL,
-  type ExtensionLoader,
   startupProfiler,
   PREVIEW_GEMINI_MODEL,
   homedir,
@@ -66,8 +68,9 @@ export async function loadConfig(
     debugMode: process.env['DEBUG'] === 'true' || false,
     question: '', // Not used in server mode directly like CLI
 
-    coreTools: settings.coreTools || undefined,
-    excludeTools: settings.excludeTools || undefined,
+    coreTools: settings.coreTools || settings.tools?.core || undefined,
+    excludeTools: settings.excludeTools || settings.tools?.exclude || undefined,
+    allowedTools: settings.allowedTools || settings.tools?.allowed || undefined,
     showMemoryUsage: settings.showMemoryUsage || false,
     approvalMode:
       process.env['GEMINI_YOLO_MODE'] === 'true'

packages/a2a-server/src/config/settings.ts

@@ -7,8 +7,8 @@
 import * as fs from 'node:fs';
 import * as path from 'node:path';
 
-import type { MCPServerConfig } from '@google/gemini-cli-core';
 import {
+  type MCPServerConfig,
   debugLogger,
   GEMINI_DIR,
   getErrorMessage,
@@ -27,6 +27,12 @@ export interface Settings {
   mcpServers?: Record<string, MCPServerConfig>;
   coreTools?: string[];
   excludeTools?: string[];
+  allowedTools?: string[];
+  tools?: {
+    allowed?: string[];
+    exclude?: string[];
+    core?: string[];
+  };
   telemetry?: TelemetrySettings;
   showMemoryUsage?: boolean;
   checkpointing?: CheckpointingSettings;
@@ -122,6 +128,7 @@ export function loadSettings(workspaceDir: string): Settings {
 function resolveEnvVarsInString(value: string): string {
   const envVarRegex = /\$(?:(\w+)|{([^}]+)})/g; // Find $VAR_NAME or ${VAR_NAME}
   return value.replace(envVarRegex, (match, varName1, varName2) => {
+    // eslint-disable-next-line @typescript-eslint/no-unsafe-assignment
     const varName = varName1 || varName2;
     if (process && process.env && typeof process.env[varName] === 'string') {
       return process.env[varName];
@@ -146,7 +153,7 @@ function resolveEnvVarsInObject<T>(obj: T): T {
   }
 
   if (Array.isArray(obj)) {
-    // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
+    // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion, @typescript-eslint/no-unsafe-return
     return obj.map((item) => resolveEnvVarsInObject(item)) as unknown as T;
   }
 

packages/a2a-server/src/http/app.test.ts

@@ -4,12 +4,11 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 
-import type { Config } from '@google/gemini-cli-core';
-import {
-  GeminiEventType,
-  ApprovalMode,
-  type ToolCallConfirmationDetails,
+import type {
+  Config,
+  ToolCallConfirmationDetails,
 } from '@google/gemini-cli-core';
+import { GeminiEventType, ApprovalMode } from '@google/gemini-cli-core';
 import type {
   TaskStatusUpdateEvent,
   SendStreamingMessageSuccessResponse,

packages/a2a-server/src/http/app.ts

@@ -7,8 +7,8 @@
 import express from 'express';
 
 import type { AgentCard, Message } from '@a2a-js/sdk';
-import type { TaskStore } from '@a2a-js/sdk/server';
 import {
+  type TaskStore,
   DefaultRequestHandler,
   InMemoryTaskStore,
   DefaultExecutionEventBus,
@@ -25,9 +25,12 @@ import { loadConfig, loadEnvironment, setTargetDir } from '../config/config.js';
 import { loadSettings } from '../config/settings.js';
 import { loadExtensions } from '../config/extension.js';
 import { commandRegistry } from '../commands/command-registry.js';
-import { debugLogger, SimpleExtensionLoader } from '@google/gemini-cli-core';
+import {
+  debugLogger,
+  SimpleExtensionLoader,
+  GitService,
+} from '@google/gemini-cli-core';
 import type { Command, CommandArgument } from '../commands/types.js';
-import { GitService } from '@google/gemini-cli-core';
 
 type CommandResponse = {
   name: string;
@@ -88,6 +91,7 @@ async function handleExecuteCommand(
   },
 ) {
   logger.info('[CoreAgent] Received /executeCommand request: ', req.body);
+  // eslint-disable-next-line @typescript-eslint/no-unsafe-assignment
   const { command, args } = req.body;
   try {
     if (typeof command !== 'string') {
@@ -211,6 +215,7 @@ export async function createApp() {
         const agentSettings = req.body.agentSettings as
           | AgentSettings
           | undefined;
+        // eslint-disable-next-line @typescript-eslint/no-unsafe-assignment
         const contextId = req.body.contextId || uuidv4();
         const wrapper = await agentExecutor.createTask(
           taskId,

packages/a2a-server/src/http/server.ts

@@ -1,4 +1,4 @@
-#!/usr/bin/env node
+#!/usr/bin/env -S node --no-warnings=DEP0040
 
 /**
  * @license

packages/a2a-server/src/persistence/gcs.ts

@@ -246,6 +246,7 @@ export class GCSTaskStore implements TaskStore {
       }
       const [compressedMetadata] = await metadataFile.download();
       const jsonData = gunzipSync(compressedMetadata).toString();
+      // eslint-disable-next-line @typescript-eslint/no-unsafe-assignment
       const loadedMetadata = JSON.parse(jsonData);
       logger.info(`Task ${taskId} metadata loaded from GCS.`);
 
@@ -282,12 +283,14 @@ export class GCSTaskStore implements TaskStore {
 
       return {
         id: taskId,
+        // eslint-disable-next-line @typescript-eslint/no-unsafe-assignment
         contextId: loadedMetadata._contextId || uuidv4(),
         kind: 'task',
         status: {
           state: persistedState._taskState,
           timestamp: new Date().toISOString(),
         },
+        // eslint-disable-next-line @typescript-eslint/no-unsafe-assignment
         metadata: loadedMetadata,
         history: [],
         artifacts: [],

packages/a2a-server/src/types.ts

@@ -122,11 +122,60 @@ export type PersistedTaskMetadata = { [k: string]: unknown };
 
 export const METADATA_KEY = '__persistedState';
 
+function isAgentSettings(value: unknown): value is AgentSettings {
+  return (
+    typeof value === 'object' &&
+    value !== null &&
+    'kind' in value &&
+    value.kind === CoderAgentEvent.StateAgentSettingsEvent &&
+    'workspacePath' in value &&
+    typeof value.workspacePath === 'string'
+  );
+}
+
+function isPersistedStateMetadata(
+  value: unknown,
+): value is PersistedStateMetadata {
+  return (
+    typeof value === 'object' &&
+    value !== null &&
+    '_agentSettings' in value &&
+    '_taskState' in value &&
+    isAgentSettings(value._agentSettings)
+  );
+}
+
 export function getPersistedState(
   metadata: PersistedTaskMetadata,
 ): PersistedStateMetadata | undefined {
-  // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion
-  return metadata?.[METADATA_KEY] as PersistedStateMetadata | undefined;
+  const state = metadata?.[METADATA_KEY];
+  if (isPersistedStateMetadata(state)) {
+    return state;
+  }
+  return undefined;
+}
+
+export function getContextIdFromMetadata(
+  metadata: PersistedTaskMetadata | undefined,
+): string | undefined {
+  if (!metadata) {
+    return undefined;
+  }
+  const contextId = metadata['_contextId'];
+  return typeof contextId === 'string' ? contextId : undefined;
+}
+
+export function getAgentSettingsFromMetadata(
+  metadata: PersistedTaskMetadata | undefined,
+): AgentSettings | undefined {
+  if (!metadata) {
+    return undefined;
+  }
+  const coderAgent = metadata['coderAgent'];
+  if (isAgentSettings(coderAgent)) {
+    return coderAgent;
+  }
+  return undefined;
 }
 
 export function setPersistedState(

packages/a2a-server/src/utils/testing_utils.ts

@@ -71,6 +71,7 @@ export function createMockConfig(
       getMcpServers: vi.fn().mockReturnValue({}),
     }),
     getGitService: vi.fn(),
+    validatePathAccess: vi.fn().mockReturnValue(undefined),
     ...overrides,
   } as unknown as Config;
   mockConfig.getMessageBus = vi.fn().mockReturnValue(createMockMessageBus());

packages/cli/index.ts

@@ -1,4 +1,4 @@
-#!/usr/bin/env node
+#!/usr/bin/env -S node --no-warnings=DEP0040
 
 /**
  * @license
@@ -36,7 +36,21 @@ process.on('uncaughtException', (error) => {
 });
 
 main().catch(async (error) => {
-  await runExitCleanup();
+  // Set a timeout to force exit if cleanup hangs
+  const cleanupTimeout = setTimeout(() => {
+    writeToStderr('Cleanup timed out, forcing exit...\n');
+    process.exit(1);
+  }, 5000);
+
+  try {
+    await runExitCleanup();
+  } catch (cleanupError) {
+    writeToStderr(
+      `Error during final cleanup: ${cleanupError instanceof Error ? cleanupError.message : String(cleanupError)}\n`,
+    );
+  } finally {
+    clearTimeout(cleanupTimeout);
+  }
 
   if (error instanceof FatalError) {
     let errorMessage = error.message;
@@ -46,6 +60,7 @@ main().catch(async (error) => {
     writeToStderr(errorMessage + '\n');
     process.exit(error.exitCode);
   }
+
   writeToStderr('An unexpected critical error occurred:');
   if (error instanceof Error) {
     writeToStderr(error.stack + '\n');

packages/cli/package.json

@@ -31,7 +31,7 @@
   "dependencies": {
     "@agentclientprotocol/sdk": "^0.12.0",
     "@google/gemini-cli-core": "file:../core",
-    "@google/genai": "1.30.0",
+    "@google/genai": "1.41.0",
     "@iarna/toml": "^2.2.5",
     "@modelcontextprotocol/sdk": "^1.23.0",
     "ansi-escapes": "^7.3.0",
@@ -48,7 +48,7 @@
     "fzf": "^0.5.2",
     "glob": "^12.0.0",
     "highlight.js": "^11.11.1",
-    "ink": "npm:@jrichman/ink@6.4.10",
+    "ink": "npm:@jrichman/ink@6.4.11",
     "ink-gradient": "^3.0.0",
     "ink-spinner": "^5.0.0",
     "latest-version": "^9.0.0",
@@ -80,7 +80,7 @@
     "@types/shell-quote": "^1.7.5",
     "@types/ws": "^8.5.10",
     "@types/yargs": "^17.0.32",
-    "ink-testing-library": "^4.0.0",
+    "@xterm/headless": "^5.5.0",
     "typescript": "^5.3.3",
     "vitest": "^3.1.1"
   },

packages/cli/src/commands/extensions/install.test.ts

@@ -16,14 +16,20 @@ import {
 } from 'vitest';
 import { handleInstall, installCommand } from './install.js';
 import yargs from 'yargs';
-import { debugLogger, type GeminiCLIExtension } from '@google/gemini-cli-core';
+import * as core from '@google/gemini-cli-core';
+import type { inferInstallMetadata } from '../../config/extension-manager.js';
+import { ExtensionManager } from '../../config/extension-manager.js';
 import type {
-  ExtensionManager,
-  inferInstallMetadata,
-} from '../../config/extension-manager.js';
-import type { requestConsentNonInteractive } from '../../config/extensions/consent.js';
+  promptForConsentNonInteractive,
+  requestConsentNonInteractive,
+} from '../../config/extensions/consent.js';
+import type {
+  isWorkspaceTrusted,
+  loadTrustedFolders,
+} from '../../config/trustedFolders.js';
 import type * as fs from 'node:fs/promises';
 import type { Stats } from 'node:fs';
+import * as path from 'node:path';
 
 const mockInstallOrUpdateExtension: Mock<
   typeof ExtensionManager.prototype.installOrUpdateExtension
@@ -31,28 +37,54 @@ const mockInstallOrUpdateExtension: Mock<
 const mockRequestConsentNonInteractive: Mock<
   typeof requestConsentNonInteractive
 > = vi.hoisted(() => vi.fn());
+const mockPromptForConsentNonInteractive: Mock<
+  typeof promptForConsentNonInteractive
+> = vi.hoisted(() => vi.fn());
 const mockStat: Mock<typeof fs.stat> = vi.hoisted(() => vi.fn());
 const mockInferInstallMetadata: Mock<typeof inferInstallMetadata> = vi.hoisted(
   () => vi.fn(),
 );
+const mockIsWorkspaceTrusted: Mock<typeof isWorkspaceTrusted> = vi.hoisted(() =>
+  vi.fn(),
+);
+const mockLoadTrustedFolders: Mock<typeof loadTrustedFolders> = vi.hoisted(() =>
+  vi.fn(),
+);
+const mockDiscover: Mock<typeof core.FolderTrustDiscoveryService.discover> =
+  vi.hoisted(() => vi.fn());
 
 vi.mock('../../config/extensions/consent.js', () => ({
   requestConsentNonInteractive: mockRequestConsentNonInteractive,
+  promptForConsentNonInteractive: mockPromptForConsentNonInteractive,
+  INSTALL_WARNING_MESSAGE: 'warning',
 }));
 
-vi.mock('../../config/extension-manager.js', async (importOriginal) => {
+vi.mock('../../config/trustedFolders.js', () => ({
+  isWorkspaceTrusted: mockIsWorkspaceTrusted,
+  loadTrustedFolders: mockLoadTrustedFolders,
+  TrustLevel: {
+    TRUST_FOLDER: 'TRUST_FOLDER',
+  },
+}));
+
+vi.mock('@google/gemini-cli-core', async (importOriginal) => {
   const actual =
-    await importOriginal<typeof import('../../config/extension-manager.js')>();
+    await importOriginal<typeof import('@google/gemini-cli-core')>();
   return {
     ...actual,
-    ExtensionManager: vi.fn().mockImplementation(() => ({
-      installOrUpdateExtension: mockInstallOrUpdateExtension,
-      loadExtensions: vi.fn(),
-    })),
-    inferInstallMetadata: mockInferInstallMetadata,
+    FolderTrustDiscoveryService: {
+      discover: mockDiscover,
+    },
   };
 });
 
+vi.mock('../../config/extension-manager.js', async (importOriginal) => ({
+  ...(await importOriginal<
+    typeof import('../../config/extension-manager.js')
+  >()),
+  inferInstallMetadata: mockInferInstallMetadata,
+}));
+
 vi.mock('../../utils/errors.js', () => ({
   getErrorMessage: vi.fn((error: Error) => error.message),
 }));
@@ -83,12 +115,31 @@ describe('handleInstall', () => {
   let processSpy: MockInstance;
 
   beforeEach(() => {
-    debugLogSpy = vi.spyOn(debugLogger, 'log');
-    debugErrorSpy = vi.spyOn(debugLogger, 'error');
+    debugLogSpy = vi.spyOn(core.debugLogger, 'log');
+    debugErrorSpy = vi.spyOn(core.debugLogger, 'error');
     processSpy = vi
       .spyOn(process, 'exit')
       .mockImplementation(() => undefined as never);
 
+    vi.spyOn(ExtensionManager.prototype, 'loadExtensions').mockResolvedValue(
+      [],
+    );
+    vi.spyOn(
+      ExtensionManager.prototype,
+      'installOrUpdateExtension',
+    ).mockImplementation(mockInstallOrUpdateExtension);
+
+    mockIsWorkspaceTrusted.mockReturnValue({ isTrusted: true, source: 'file' });
+    mockDiscover.mockResolvedValue({
+      commands: [],
+      mcps: [],
+      hooks: [],
+      skills: [],
+      settings: [],
+      securityWarnings: [],
+      discoveryErrors: [],
+    });
+
     mockInferInstallMetadata.mockImplementation(async (source, args) => {
       if (
         source.startsWith('http://') ||
@@ -114,12 +165,29 @@ describe('handleInstall', () => {
     mockStat.mockClear();
     mockInferInstallMetadata.mockClear();
     vi.clearAllMocks();
+    vi.restoreAllMocks();
   });
 
+  function createMockExtension(
+    overrides: Partial<core.GeminiCLIExtension> = {},
+  ): core.GeminiCLIExtension {
+    return {
+      name: 'mock-extension',
+      version: '1.0.0',
+      isActive: true,
+      path: '/mock/path',
+      contextFiles: [],
+      id: 'mock-id',
+      ...overrides,
+    };
+  }
+
   it('should install an extension from a http source', async () => {
-    mockInstallOrUpdateExtension.mockResolvedValue({
-      name: 'http-extension',
-    } as unknown as GeminiCLIExtension);
+    mockInstallOrUpdateExtension.mockResolvedValue(
+      createMockExtension({
+        name: 'http-extension',
+      }),
+    );
 
     await handleInstall({
       source: 'http://google.com',
@@ -131,9 +199,11 @@ describe('handleInstall', () => {
   });
 
   it('should install an extension from a https source', async () => {
-    mockInstallOrUpdateExtension.mockResolvedValue({
-      name: 'https-extension',
-    } as unknown as GeminiCLIExtension);
+    mockInstallOrUpdateExtension.mockResolvedValue(
+      createMockExtension({
+        name: 'https-extension',
+      }),
+    );
 
     await handleInstall({
       source: 'https://google.com',
@@ -145,9 +215,11 @@ describe('handleInstall', () => {
   });
 
   it('should install an extension from a git source', async () => {
-    mockInstallOrUpdateExtension.mockResolvedValue({
-      name: 'git-extension',
-    } as unknown as GeminiCLIExtension);
+    mockInstallOrUpdateExtension.mockResolvedValue(
+      createMockExtension({
+        name: 'git-extension',
+      }),
+    );
 
     await handleInstall({
       source: 'git@some-url',
@@ -171,9 +243,11 @@ describe('handleInstall', () => {
   });
 
   it('should install an extension from a sso source', async () => {
-    mockInstallOrUpdateExtension.mockResolvedValue({
-      name: 'sso-extension',
-    } as unknown as GeminiCLIExtension);
+    mockInstallOrUpdateExtension.mockResolvedValue(
+      createMockExtension({
+        name: 'sso-extension',
+      }),
+    );
 
     await handleInstall({
       source: 'sso://google.com',
@@ -185,12 +259,14 @@ describe('handleInstall', () => {
   });
 
   it('should install an extension from a local path', async () => {
-    mockInstallOrUpdateExtension.mockResolvedValue({
-      name: 'local-extension',
-    } as unknown as GeminiCLIExtension);
+    mockInstallOrUpdateExtension.mockResolvedValue(
+      createMockExtension({
+        name: 'local-extension',
+      }),
+    );
     mockStat.mockResolvedValue({} as Stats);
     await handleInstall({
-      source: '/some/path',
+      source: path.join('/', 'some', 'path'),
     });
 
     expect(debugLogSpy).toHaveBeenCalledWith(
@@ -208,4 +284,144 @@ describe('handleInstall', () => {
     expect(debugErrorSpy).toHaveBeenCalledWith('Install extension failed');
     expect(processSpy).toHaveBeenCalledWith(1);
   });
+
+  it('should proceed if local path is already trusted', async () => {
+    mockInstallOrUpdateExtension.mockResolvedValue(
+      createMockExtension({
+        name: 'local-extension',
+      }),
+    );
+    mockStat.mockResolvedValue({} as Stats);
+    mockIsWorkspaceTrusted.mockReturnValue({ isTrusted: true, source: 'file' });
+
+    await handleInstall({
+      source: path.join('/', 'some', 'path'),
+    });
+
+    expect(mockIsWorkspaceTrusted).toHaveBeenCalled();
+    expect(mockPromptForConsentNonInteractive).not.toHaveBeenCalled();
+    expect(debugLogSpy).toHaveBeenCalledWith(
+      'Extension "local-extension" installed successfully and enabled.',
+    );
+  });
+
+  it('should prompt and proceed if user accepts trust', async () => {
+    mockInstallOrUpdateExtension.mockResolvedValue(
+      createMockExtension({
+        name: 'local-extension',
+      }),
+    );
+    mockStat.mockResolvedValue({} as Stats);
+    mockIsWorkspaceTrusted.mockReturnValue({
+      isTrusted: undefined,
+      source: undefined,
+    });
+    mockPromptForConsentNonInteractive.mockResolvedValue(true);
+    const mockSetValue = vi.fn();
+    mockLoadTrustedFolders.mockReturnValue({
+      setValue: mockSetValue,
+      user: { path: '', config: {} },
+      errors: [],
+      rules: [],
+      isPathTrusted: vi.fn(),
+    });
+
+    await handleInstall({
+      source: path.join('/', 'untrusted', 'path'),
+    });
+
+    expect(mockIsWorkspaceTrusted).toHaveBeenCalled();
+    expect(mockPromptForConsentNonInteractive).toHaveBeenCalled();
+    expect(mockSetValue).toHaveBeenCalledWith(
+      expect.stringContaining(path.join('untrusted', 'path')),
+      'TRUST_FOLDER',
+    );
+    expect(debugLogSpy).toHaveBeenCalledWith(
+      'Extension "local-extension" installed successfully and enabled.',
+    );
+  });
+
+  it('should prompt and abort if user denies trust', async () => {
+    mockStat.mockResolvedValue({} as Stats);
+    mockIsWorkspaceTrusted.mockReturnValue({
+      isTrusted: undefined,
+      source: undefined,
+    });
+    mockPromptForConsentNonInteractive.mockResolvedValue(false);
+
+    await handleInstall({
+      source: path.join('/', 'evil', 'path'),
+    });
+
+    expect(mockIsWorkspaceTrusted).toHaveBeenCalled();
+    expect(mockPromptForConsentNonInteractive).toHaveBeenCalled();
+    expect(debugErrorSpy).toHaveBeenCalledWith(
+      expect.stringContaining('Installation aborted: Folder'),
+    );
+    expect(processSpy).toHaveBeenCalledWith(1);
+  });
+
+  it('should include discovery results in trust prompt', async () => {
+    mockInstallOrUpdateExtension.mockResolvedValue(
+      createMockExtension({
+        name: 'local-extension',
+      }),
+    );
+    mockStat.mockResolvedValue({} as Stats);
+    mockIsWorkspaceTrusted.mockReturnValue({
+      isTrusted: undefined,
+      source: undefined,
+    });
+    mockDiscover.mockResolvedValue({
+      commands: ['custom-cmd'],
+      mcps: [],
+      hooks: [],
+      skills: ['cool-skill'],
+      settings: [],
+      securityWarnings: ['Security risk!'],
+      discoveryErrors: ['Read error'],
+    });
+    mockPromptForConsentNonInteractive.mockResolvedValue(true);
+    mockLoadTrustedFolders.mockReturnValue({
+      setValue: vi.fn(),
+      user: { path: '', config: {} },
+      errors: [],
+      rules: [],
+      isPathTrusted: vi.fn(),
+    });
+
+    await handleInstall({
+      source: '/untrusted/path',
+    });
+
+    expect(mockPromptForConsentNonInteractive).toHaveBeenCalledWith(
+      expect.stringContaining('This folder contains:'),
+      false,
+    );
+    expect(mockPromptForConsentNonInteractive).toHaveBeenCalledWith(
+      expect.stringContaining('custom-cmd'),
+      false,
+    );
+    expect(mockPromptForConsentNonInteractive).toHaveBeenCalledWith(
+      expect.stringContaining('cool-skill'),
+      false,
+    );
+    expect(mockPromptForConsentNonInteractive).toHaveBeenCalledWith(
+      expect.stringContaining('Security Warnings:'),
+      false,
+    );
+    expect(mockPromptForConsentNonInteractive).toHaveBeenCalledWith(
+      expect.stringContaining('Security risk!'),
+      false,
+    );
+    expect(mockPromptForConsentNonInteractive).toHaveBeenCalledWith(
+      expect.stringContaining('Discovery Errors:'),
+      false,
+    );
+    expect(mockPromptForConsentNonInteractive).toHaveBeenCalledWith(
+      expect.stringContaining('Read error'),
+      false,
+    );
+  });
 });
+// Implementation completed.

packages/cli/src/commands/extensions/install.ts

@@ -5,10 +5,16 @@
  */
 
 import type { CommandModule } from 'yargs';
-import { debugLogger } from '@google/gemini-cli-core';
+import chalk from 'chalk';
+import {
+  debugLogger,
+  FolderTrustDiscoveryService,
+  getRealPath,
+} from '@google/gemini-cli-core';
 import { getErrorMessage } from '../../utils/errors.js';
 import {
   INSTALL_WARNING_MESSAGE,
+  promptForConsentNonInteractive,
   requestConsentNonInteractive,
 } from '../../config/extensions/consent.js';
 import {
@@ -16,6 +22,11 @@ import {
   inferInstallMetadata,
 } from '../../config/extension-manager.js';
 import { loadSettings } from '../../config/settings.js';
+import {
+  isWorkspaceTrusted,
+  loadTrustedFolders,
+  TrustLevel,
+} from '../../config/trustedFolders.js';
 import { promptForSetting } from '../../config/extensions/extensionSettings.js';
 import { exitCli } from '../utils.js';
 
@@ -36,6 +47,95 @@ export async function handleInstall(args: InstallArgs) {
       allowPreRelease: args.allowPreRelease,
     });
 
+    const workspaceDir = process.cwd();
+    const settings = loadSettings(workspaceDir).merged;
+
+    if (installMetadata.type === 'local' || installMetadata.type === 'link') {
+      const resolvedPath = getRealPath(source);
+      installMetadata.source = resolvedPath;
+      const trustResult = isWorkspaceTrusted(settings, resolvedPath);
+      if (trustResult.isTrusted !== true) {
+        const discoveryResults =
+          await FolderTrustDiscoveryService.discover(resolvedPath);
+
+        const hasDiscovery =
+          discoveryResults.commands.length > 0 ||
+          discoveryResults.mcps.length > 0 ||
+          discoveryResults.hooks.length > 0 ||
+          discoveryResults.skills.length > 0 ||
+          discoveryResults.settings.length > 0;
+
+        const promptLines = [
+          '',
+          chalk.bold('Do you trust the files in this folder?'),
+          '',
+          `The extension source at "${resolvedPath}" is not trusted.`,
+          '',
+          'Trusting a folder allows Gemini CLI to load its local configurations,',
+          'including custom commands, hooks, MCP servers, agent skills, and',
+          'settings. These configurations could execute code on your behalf or',
+          'change the behavior of the CLI.',
+          '',
+        ];
+
+        if (discoveryResults.discoveryErrors.length > 0) {
+          promptLines.push(chalk.red('❌ Discovery Errors:'));
+          for (const error of discoveryResults.discoveryErrors) {
+            promptLines.push(chalk.red(`  • ${error}`));
+          }
+          promptLines.push('');
+        }
+
+        if (discoveryResults.securityWarnings.length > 0) {
+          promptLines.push(chalk.yellow('⚠️  Security Warnings:'));
+          for (const warning of discoveryResults.securityWarnings) {
+            promptLines.push(chalk.yellow(`  • ${warning}`));
+          }
+          promptLines.push('');
+        }
+
+        if (hasDiscovery) {
+          promptLines.push(chalk.bold('This folder contains:'));
+          const groups = [
+            { label: 'Commands', items: discoveryResults.commands },
+            { label: 'MCP Servers', items: discoveryResults.mcps },
+            { label: 'Hooks', items: discoveryResults.hooks },
+            { label: 'Skills', items: discoveryResults.skills },
+            { label: 'Setting overrides', items: discoveryResults.settings },
+          ].filter((g) => g.items.length > 0);
+
+          for (const group of groups) {
+            promptLines.push(
+              `  • ${chalk.bold(group.label)} (${group.items.length}):`,
+            );
+            for (const item of group.items) {
+              promptLines.push(`    - ${item}`);
+            }
+          }
+          promptLines.push('');
+        }
+
+        promptLines.push(
+          chalk.yellow(
+            'Do you want to trust this folder and continue with the installation? [y/N]: ',
+          ),
+        );
+
+        const confirmed = await promptForConsentNonInteractive(
+          promptLines.join('\n'),
+          false,
+        );
+        if (confirmed) {
+          const trustedFolders = loadTrustedFolders();
+          await trustedFolders.setValue(resolvedPath, TrustLevel.TRUST_FOLDER);
+        } else {
+          throw new Error(
+            `Installation aborted: Folder "${resolvedPath}" is not trusted.`,
+          );
+        }
+      }
+    }
+
     const requestConsent = args.consent
       ? () => Promise.resolve(true)
       : requestConsentNonInteractive;
@@ -44,12 +144,11 @@ export async function handleInstall(args: InstallArgs) {
       debugLogger.log(INSTALL_WARNING_MESSAGE);
     }
 
-    const workspaceDir = process.cwd();
     const extensionManager = new ExtensionManager({
       workspaceDir,
       requestConsent,
       requestSetting: promptForSetting,
-      settings: loadSettings(workspaceDir).merged,
+      settings,
     });
     await extensionManager.loadExtensions();
     const extension =

packages/cli/src/commands/extensions/utils.ts

@@ -47,6 +47,7 @@ const defaultRequestConfirmation: RequestConfirmationCallback = async (
     message,
     initial: false,
   });
+  // eslint-disable-next-line @typescript-eslint/no-unsafe-return
   return response.confirm;
 };
 

packages/cli/src/config/config.test.ts

@@ -21,7 +21,11 @@ import {
   type MCPServerConfig,
 } from '@google/gemini-cli-core';
 import { loadCliConfig, parseArguments, type CliArgs } from './config.js';
-import { type Settings, createTestMergedSettings } from './settings.js';
+import {
+  type Settings,
+  type MergedSettings,
+  createTestMergedSettings,
+} from './settings.js';
 import * as ServerConfig from '@google/gemini-cli-core';
 
 import { isWorkspaceTrusted } from './trustedFolders.js';
@@ -2012,6 +2016,40 @@ describe('loadCliConfig useRipgrep', () => {
   });
 });
 
+describe('loadCliConfig directWebFetch', () => {
+  beforeEach(() => {
+    vi.resetAllMocks();
+    vi.mocked(os.homedir).mockReturnValue('/mock/home/user');
+    vi.stubEnv('GEMINI_API_KEY', 'test-api-key');
+    vi.spyOn(ExtensionManager.prototype, 'getExtensions').mockReturnValue([]);
+  });
+
+  afterEach(() => {
+    vi.unstubAllEnvs();
+    vi.restoreAllMocks();
+  });
+
+  it('should be false by default when directWebFetch is not set in settings', async () => {
+    process.argv = ['node', 'script.js'];
+    const argv = await parseArguments(createTestMergedSettings());
+    const settings = createTestMergedSettings();
+    const config = await loadCliConfig(settings, 'test-session', argv);
+    expect(config.getDirectWebFetch()).toBe(false);
+  });
+
+  it('should be true when directWebFetch is set to true in settings', async () => {
+    process.argv = ['node', 'script.js'];
+    const argv = await parseArguments(createTestMergedSettings());
+    const settings = createTestMergedSettings({
+      experimental: {
+        directWebFetch: true,
+      },
+    });
+    const config = await loadCliConfig(settings, 'test-session', argv);
+    expect(config.getDirectWebFetch()).toBe(true);
+  });
+});
+
 describe('screenReader configuration', () => {
   beforeEach(() => {
     vi.resetAllMocks();
@@ -2599,6 +2637,21 @@ describe('loadCliConfig approval mode', () => {
     expect(config.getApprovalMode()).toBe(ApprovalMode.DEFAULT);
   });
 
+  it('should pass planSettings.directory from settings to config', async () => {
+    process.argv = ['node', 'script.js'];
+    const settings = createTestMergedSettings({
+      general: {
+        plan: {
+          directory: '.custom-plans',
+        },
+      },
+    } as unknown as MergedSettings);
+    const argv = await parseArguments(settings);
+    const config = await loadCliConfig(settings, 'test-session', argv);
+    const plansDir = config.storage.getPlansDir();
+    expect(plansDir).toContain('.custom-plans');
+  });
+
   // --- Untrusted Folder Scenarios ---
   describe('when folder is NOT trusted', () => {
     beforeEach(() => {

packages/cli/src/config/config.ts

@@ -56,7 +56,10 @@ import { resolvePath } from '../utils/resolvePath.js';
 import { RESUME_LATEST } from '../utils/sessionUtils.js';
 
 import { isWorkspaceTrusted } from './trustedFolders.js';
-import { createPolicyEngineConfig } from './policy.js';
+import {
+  createPolicyEngineConfig,
+  resolveWorkspacePolicyState,
+} from './policy.js';
 import { ExtensionManager } from './extension-manager.js';
 import { McpServerEnablementManager } from './mcp/mcpServerEnablement.js';
 import type { ExtensionEvents } from '@google/gemini-cli-core/src/utils/extensionLoader.js';
@@ -692,9 +695,17 @@ export async function loadCliConfig(
     policyPaths: argv.policy,
   };
 
+  const { workspacePoliciesDir, policyUpdateConfirmationRequest } =
+    await resolveWorkspacePolicyState({
+      cwd,
+      trustedFolder,
+      interactive,
+    });
+
   const policyEngineConfig = await createPolicyEngineConfig(
     effectiveSettings,
     approvalMode,
+    workspacePoliciesDir,
   );
   policyEngineConfig.nonInteractive = !interactive;
 
@@ -758,6 +769,7 @@ export async function loadCliConfig(
     coreTools: settings.tools?.core || undefined,
     allowedTools: allowedTools.length > 0 ? allowedTools : undefined,
     policyEngineConfig,
+    policyUpdateConfirmationRequest,
     excludeTools,
     toolDiscoveryCommand: settings.tools?.discoveryCommand,
     toolCallCommand: settings.tools?.callCommand,
@@ -814,6 +826,8 @@ export async function loadCliConfig(
     enableExtensionReloading: settings.experimental?.extensionReloading,
     enableAgents: settings.experimental?.enableAgents,
     plan: settings.experimental?.plan,
+    directWebFetch: settings.experimental?.directWebFetch,
+    planSettings: settings.general?.plan,
     enableEventDrivenScheduler: true,
     skillsSupport: settings.skills?.enabled ?? true,
     disabledSkills: settings.skills?.disabled,
@@ -835,7 +849,6 @@ export async function loadCliConfig(
     enableShellOutputEfficiency:
       settings.tools?.shell?.enableShellOutputEfficiency ?? true,
     skipNextSpeakerCheck: settings.model?.skipNextSpeakerCheck,
-    enablePromptCompletion: settings.general?.enablePromptCompletion,
     truncateToolOutputThreshold: settings.tools?.truncateToolOutputThreshold,
     eventEmitter: coreEvents,
     useWriteTodos: argv.useWriteTodos ?? settings.useWriteTodos,
@@ -865,6 +878,7 @@ export async function loadCliConfig(
         agents: refreshedSettings.merged.agents,
       };
     },
+    enableConseca: settings.security?.enableConseca,
   });
 }